HHsearch alignment for GI: 254780916 and conserved domain: PRK05564

>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=97.19  E-value=0.00043  Score=48.54  Aligned_cols=107  Identities=15%  Similarity=0.149  Sum_probs=64.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC----CCCCCCC-CCCCCCCCCCCCCCHHHHH
Q ss_conf             1111122222222222222223443204887327774367999999842----6754332-1012346554210024331
Q gi|254780916|r  138 ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES----GKRAFFP-FFIVNCGMIDQDKIEKFLF  212 (482)
Q Consensus       138 ~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~----s~r~~~~-fi~v~c~~~~~~~~e~~lF  212 (482)
T Consensus         2 ~f~~iiGq~~i~~~L~~~i~~-~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~-------------   67 (313)
T PRK05564          2 SFRTIIGHENIKNRIDNSIIK-GKFSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKP-------------   67 (313)
T ss_pred             CHHHCCCHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-------------
T ss_conf             832326829999999999987-998750432799985099999999999828997788986588633-------------


Q ss_pred             CCCCCCCCCCCCCCCCCC-------CCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf             125555322111001234-------466714751664200188999888877642
Q gi|254780916|r  213 GDVDLQTKNSAQFLGKFI-------EANGGTIVLEEPDALPLAVQGRIYNFIETG  260 (482)
Q Consensus       213 G~~~~~~~~~~~~~g~~~-------~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~  260 (482)
T Consensus        68 -~~~~~I~vd~IR-~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEP  120 (313)
T PRK05564         68 -INKKSIGVDDIR-NIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEP  120 (313)
T ss_pred             -CCCCCCCHHHHH-HHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCC
T ss_conf             -225699989999-99999840862589569998077775899999984550368