HHsearch alignment for GI: 254780916 and conserved domain: PRK05564
>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=97.19 E-value=0.00043 Score=48.54 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=64.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC----CCCCCCC-CCCCCCCCCCCCCCHHHHH
Q ss_conf 1111122222222222222223443204887327774367999999842----6754332-1012346554210024331
Q gi|254780916|r 138 ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES----GKRAFFP-FFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 138 ~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~----s~r~~~~-fi~v~c~~~~~~~~e~~lF 212 (482)
T Consensus 2 ~f~~iiGq~~i~~~L~~~i~~-~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~------------- 67 (313)
T PRK05564 2 SFRTIIGHENIKNRIDNSIIK-GKFSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKP------------- 67 (313)
T ss_pred CHHHCCCHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-------------
T ss_conf 832326829999999999987-998750432799985099999999999828997788986588633-------------
Q ss_pred CCCCCCCCCCCCCCCCCC-------CCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 125555322111001234-------466714751664200188999888877642
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKFI-------EANGGTIVLEEPDALPLAVQGRIYNFIETG 260 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~~-------~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~ 260 (482)
T Consensus 68 -~~~~~I~vd~IR-~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEP 120 (313)
T PRK05564 68 -INKKSIGVDDIR-NIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEP 120 (313)
T ss_pred -CCCCCCCHHHHH-HHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCC
T ss_conf -225699989999-99999840862589569998077775899999984550368