HHsearch alignment for GI: 254780916 and conserved domain: PRK05657
>PRK05657 RNA polymerase sigma factor RpoS; Validated.
Probab=92.99 E-value=0.2 Score=29.76 Aligned_cols=49 Identities=29% Similarity=0.455 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHCC---CHHHHHHHHCCCH-----------HHHHHHHHHHCCCCCCC
Q ss_conf 9999999999999998287---2789997848998-----------89999999818881449
Q gi|254780916|r 434 RLSDIEKEIIGLAMKLYRA---QMSEVARRLGIGR-----------STLYRKIREYNIEVDSL 482 (482)
Q Consensus 434 ~l~e~E~~~I~~aL~~~~G---n~~~aA~~LGIsR-----------~tL~rKlk~~gi~~d~~ 482 (482)
T Consensus 265 ~L~~REr~II~~RfGL~~~e~~TL~EIg~~lgvSRERVRQIE~~AL~KLR~~l~~~~l~~~~~ 327 (328)
T PRK05657 265 ELNDKQREVIERRFGLNGYEAATLEEVAREIGLTRERVRQIQVEALRRLREILQTQGLSKDAL 327 (328)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 699999999999808899896059999989697999999999999999879999869973424