HHsearch alignment for GI: 254780916 and conserved domain: PRK06585
>PRK06585 holA DNA polymerase III subunit delta; Reviewed.
Probab=94.16 E-value=0.51 Score=26.85 Aligned_cols=188 Identities=14% Similarity=0.090 Sum_probs=96.7
Q ss_pred CEEEEEECCCCCHHHHHHHHH-HHCCCCCCCCCCCCC--CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 204887327774367999999-842675433210123--46554210024331125555322111001234466714751
Q gi|254780916|r 163 AIPIMIQGEFGVGKKRLSRFI-HESGKRAFFPFFIVN--CGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVL 239 (482)
Q Consensus 163 ~~~vli~Ge~GtGK~~~A~~i-H~~s~r~~~~fi~v~--c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l 239 (482)
T Consensus 20 ~~~~LlyG~d~glv~e~~~~l~~~~~~~~~~~f~~~~l~~~el~~d--~~~l~de~~--------t~slF~--~~rlI~i 87 (343)
T PRK06585 20 IRAVLLYGPDRGLVRERARRLAKSVVDDPDDPFAVVRLDGDELDAD--PARLEDEAN--------TISLFG--GRRLIWV 87 (343)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCC--HHHHHHHHH--------CCCCCC--CCEEEEE
T ss_conf 6589996387647999999999972556678741577479988339--999999984--------768768--9848997
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66420018899988887764200112355321234315652143321111112333799988654334467787744222
Q gi|254780916|r 240 EEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDI 319 (482)
Q Consensus 240 ~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI 319 (482)
T Consensus 88 ~~~~d-------~~~~~l~~~l~~~~-------~~~~lIi~a-~~L~k---~skLrk-~~e~-~~~~~~i~cY~d~~~~l 147 (343)
T PRK06585 88 RAGGK-------SLAAALKALLAEPP-------GDAFIVIEA-GDLKK---GSSLRK-LFET-AASAAAIPCYADDERDL 147 (343)
T ss_pred ECCCH-------HHHHHHHHHHHCCC-------CCEEEEEEC-CCCCC---CCHHHH-HHHH-CCCEEEEEECCCCHHHH
T ss_conf 26872-------56999999981789-------982899973-89773---118999-9986-47869995006998899
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCC
Q ss_conf 2556677764101122333321111100012233898689999999999874-3898106889545421244
Q gi|254780916|r 320 PWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIG-LKDSHLTEDRFVLLLSREG 390 (482)
Q Consensus 320 ~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~-~~~~~i~~~~~~~~l~~~~ 390 (482)
T Consensus 148 ~~~i~~~l~~~----g~---~i~~~a~~~L~~~~-g~d~~~~~~EleKL~ly~~~~~~It~edv~~~v~~~~ 211 (343)
T PRK06585 148 ARLIDDELAKA----GL---RITPDARAYLVALL-GGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDAS 211 (343)
T ss_pred HHHHHHHHHHC----CC---CCCHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
T ss_conf 99999999982----99---97799999999873-4279999999999999848999789999999868641