HHsearch alignment for GI: 254780916 and conserved domain: PRK08116

>PRK08116 hypothetical protein; Validated.
Probab=97.80  E-value=1.9e-05  Score=58.07  Aligned_cols=139  Identities=19%  Similarity=0.207  Sum_probs=78.0

Q ss_pred             CCCCCCCCCCCCCC---CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC-CCCCCCCCC
Q ss_conf             22222222222234---43204887327774367999999842675433210123465542100243311-255553221
Q gi|254780916|r  147 PAMIQVVDLARKAG---DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNS  222 (482)
Q Consensus       147 ~~m~~v~~~i~~~a---~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG-~~~~~~~~~  222 (482)
T Consensus        89 ~a~~~a~~Y~~~f~~~~~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~----~ll-~~lk~~~~~~~~~~~  163 (262)
T PRK08116         89 KAYKVAVKYVKKFEEMKKESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVP----ELL-NRIKSTYNSEGKEDE  163 (262)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH----HHH-HHHHHHHHCCCCHHH
T ss_conf             999999999998987364686189989899989999999999999879939998899----999-999999863561019


Q ss_pred             CCCCCCCCCCCCCEEEECCCCH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf             1100123446671475166420--01889998888776420011235532123431565214332111111233379998
Q gi|254780916|r  223 AQFLGKFIEANGGTIVLEEPDA--LPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY  300 (482)
Q Consensus       223 ~~~~g~~~~a~~Gtl~l~ei~~--L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~  300 (482)
T Consensus       164 ~e~l~~l~~--~dLLIiDDlG~e~~t~w~~e~lf~IIn~Ry-~---~~kp------tIiTTNl~~~eL~~--~~~~Ri~s  229 (262)
T PRK08116        164 NEIIRALDN--ADLLILDDLGAEKDTEWVREKLYNIIDSRY-R---KGLP------TIFTTNLSLEELKN--QYGKRTYS  229 (262)
T ss_pred             HHHHHHHHC--CCEEEEEHHCCCCCCHHHHHHHHHHHHHHH-H---CCCC------EEEECCCCHHHHHH--HHHHHHHH
T ss_conf             999998612--998998322145698789999999999999-7---6999------89987999999999--86379999


Q ss_pred             HHHH
Q ss_conf             8654
Q gi|254780916|r  301 RISV  304 (482)
Q Consensus       301 rL~~  304 (482)
T Consensus       230 Rl~e  233 (262)
T PRK08116        230 RILE  233 (262)
T ss_pred             HHHH
T ss_conf             9986