HHsearch alignment for GI: 254780916 and conserved domain: PRK08181

>PRK08181 transposase; Validated.
Probab=97.57  E-value=3.5e-05  Score=56.22  Aligned_cols=138  Identities=12%  Similarity=0.118  Sum_probs=73.2

Q ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             23443204887327774367999999842675433210123465542100243311255553221110012344667147
Q gi|254780916|r  158 KAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTI  237 (482)
Q Consensus       158 ~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl  237 (482)
T Consensus       101 ~fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~a----~~~---~~~~~~~~~l~~~--dLL  171 (269)
T PRK08181        101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVA----RRE---LQLESAIAKLDKF--DLL  171 (269)
T ss_pred             HHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH----HHC---CCHHHHHHHHHCC--CEE
T ss_conf             5886487089989999878899999999999879939997899999999997----755---8399999997444--601


Q ss_pred             EECCCCHHHHHHHH--HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCC---CCCHHHHHHHHHHHH----HHHHHH
Q ss_conf             51664200188999--888877642001123553212343156521433211---111123337999886----543344
Q gi|254780916|r  238 VLEEPDALPLAVQG--RIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLP---QVKSHVFRKDLYYRI----SVFLIN  308 (482)
Q Consensus       238 ~l~ei~~L~~~~Q~--~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~---~~~~g~fr~dLy~rL----~~~~i~  308 (482)
T Consensus       172 IiDe~G~~~~~~~~~~~lf~lI~~R-ye~----~------S~IITSn~~~~~W~~~f~D~~la~AiLDRLvH~a~~i~l~  240 (269)
T PRK08181        172 ILDDLAYVTKDQAETSVLFELISAR-YER----R------SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMN  240 (269)
T ss_pred             EEHHCCCCCCCHHHHHHHHHHHHHH-HCC----C------CEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEC
T ss_conf             2201056679989999999999998-578----8------8899889997788775386889999999870152899755


Q ss_pred             HHHHHHH
Q ss_conf             6778774
Q gi|254780916|r  309 ISTLRSR  315 (482)
Q Consensus       309 iPpLReR  315 (482)
T Consensus       241 GeSyR~k  247 (269)
T PRK08181        241 VESYRRR  247 (269)
T ss_pred             CCCCCCH
T ss_conf             8761205