HHsearch alignment for GI: 254780916 and conserved domain: PRK08181
>PRK08181 transposase; Validated.
Probab=97.57 E-value=3.5e-05 Score=56.22 Aligned_cols=138 Identities=12% Similarity=0.118 Sum_probs=73.2
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 23443204887327774367999999842675433210123465542100243311255553221110012344667147
Q gi|254780916|r 158 KAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 158 ~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
T Consensus 101 ~fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~a----~~~---~~~~~~~~~l~~~--dLL 171 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVA----RRE---LQLESAIAKLDKF--DLL 171 (269)
T ss_pred HHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH----HHC---CCHHHHHHHHHCC--CEE
T ss_conf 5886487089989999878899999999999879939997899999999997----755---8399999997444--601
Q ss_pred EECCCCHHHHHHHH--HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCC---CCCHHHHHHHHHHHH----HHHHHH
Q ss_conf 51664200188999--888877642001123553212343156521433211---111123337999886----543344
Q gi|254780916|r 238 VLEEPDALPLAVQG--RIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLP---QVKSHVFRKDLYYRI----SVFLIN 308 (482)
Q Consensus 238 ~l~ei~~L~~~~Q~--~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~---~~~~g~fr~dLy~rL----~~~~i~ 308 (482)
T Consensus 172 IiDe~G~~~~~~~~~~~lf~lI~~R-ye~----~------S~IITSn~~~~~W~~~f~D~~la~AiLDRLvH~a~~i~l~ 240 (269)
T PRK08181 172 ILDDLAYVTKDQAETSVLFELISAR-YER----R------SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMN 240 (269)
T ss_pred EEHHCCCCCCCHHHHHHHHHHHHHH-HCC----C------CEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEC
T ss_conf 2201056679989999999999998-578----8------8899889997788775386889999999870152899755
Q ss_pred HHHHHHH
Q ss_conf 6778774
Q gi|254780916|r 309 ISTLRSR 315 (482)
Q Consensus 309 iPpLReR 315 (482)
T Consensus 241 GeSyR~k 247 (269)
T PRK08181 241 VESYRRR 247 (269)
T ss_pred CCCCCCH
T ss_conf 8761205