HHsearch alignment for GI: 254780916 and conserved domain: PRK08770
>PRK08770 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.07 E-value=0.00014 Score=52.04 Aligned_cols=222 Identities=14% Similarity=0.155 Sum_probs=120.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCC-----CCCCCCCCCCCCCH
Q ss_conf 2111111112222222222222222344320488732777436799999984267543321-----01234655421002
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPF-----FIVNCGMIDQDKIE 208 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~f-----i~v~c~~~~~~~~e 208 (482)
T Consensus 10 ~rp~~f~~~~gq~~~~~~l~~~~~~-~~~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~~i~~~~~~ 88 (663)
T PRK08770 10 WRPKRFAELVGQEHVVRALSNALDS-GRVHHAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACLDIDAGRYI 88 (663)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 0887464522859999999999970-997404762279988888999999998678999999978778778988548988
Q ss_pred HHHHCCCCCC-CCCCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 4331125555-3221110012344-------6671475166420018899988887764200112355321234315652
Q gi|254780916|r 209 KFLFGDVDLQ-TKNSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFL 280 (482)
Q Consensus 209 ~~lFG~~~~~-~~~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~ 280 (482)
T Consensus 89 d~~--e~daas~~~v~~~r~~~~~~~~~p~~~~~kvy~idevhmls~~~fna~lktleep-----------p~~v~f~~a 155 (663)
T PRK08770 89 DLL--EIDAASNTGVDDVREVIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEP-----------PEHVKFLLA 155 (663)
T ss_pred CEE--EEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCC-----------CCCEEEEEE
T ss_conf 658--8646765888999999984435887774369997004332899999998740278-----------644289985
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 14332111111233379998865433446778774422225566777641011223333211111000122338986899
Q gi|254780916|r 281 TEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 (482)
Q Consensus 281 t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvRE 360 (482)
T Consensus 156 tt~~-~k~p-~t~~src~~f~~~~--~~~-------~~---~~~~-l~~~~~~e~---~~~~~~~~~~~~~-~~~gs~rd 216 (663)
T PRK08770 156 TTDP-QKLP-VTVLSRCLQFNLKR--LDE-------DQ---IQGQ-MTRILAAEQ---IESDPSAIVQLSK-AADGSLRD 216 (663)
T ss_pred CCCH-HHCC-HHHHHHHHHCCCCC--CCH-------HH---HHHH-HHHHHHHCC---CCCCHHHHHHHHH-HCCCCHHH
T ss_conf 4873-3374-89998887634377--999-------99---9999-999999839---9769999999999-74785677
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 99999999874389810688954542124
Q gi|254780916|r 361 LKNILLRAVIGLKDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 361 L~n~i~r~~i~~~~~~i~~~~~~~~l~~~ 389 (482)
T Consensus 217 ~lsl~~q~~~~~-~~~~~~~~v~~mlg~~ 244 (663)
T PRK08770 217 GLSLLDQAIAYA-GGALREDVVRTMLGTV 244 (663)
T ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHCCC
T ss_conf 888999999866-8976899999984888