HHsearch alignment for GI: 254780916 and conserved domain: PRK09836

>PRK09836 DNA-binding transcriptional activator CusR; Provisional.
Probab=99.89  E-value=6.6e-23  Score=181.52  Aligned_cols=117  Identities=14%  Similarity=0.181  Sum_probs=110.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             838998699899999999999889889998937--999986089989999785469888999999998578983999926
Q gi|254780916|r   11 KRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTT   88 (482)
Q Consensus        11 ~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~   88 (482)
T Consensus         1 MkILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlvilDi~lP~~~G~~l~~~iR~~~~~~PII~Lta   80 (226)
T PRK09836          1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTA   80 (226)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf             98999939999999999999878999999899999999985189999998899999987204356776167960999944


Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             899999998885057432222222222222222222222
Q gi|254780916|r   89 QDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG  127 (482)
Q Consensus        89 ~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~  127 (482)
T Consensus        81 ~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr~  119 (226)
T PRK09836         81 LGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG  119 (226)
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf             589889999997699688636876799999999996626