HHsearch alignment for GI: 254780916 and conserved domain: PRK09836
>PRK09836 DNA-binding transcriptional activator CusR; Provisional.
Probab=99.89 E-value=6.6e-23 Score=181.52 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=110.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 838998699899999999999889889998937--999986089989999785469888999999998578983999926
Q gi|254780916|r 11 KRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTT 88 (482)
Q Consensus 11 ~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~ 88 (482)
T Consensus 1 MkILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlvilDi~lP~~~G~~l~~~iR~~~~~~PII~Lta 80 (226)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTA 80 (226)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 98999939999999999999878999999899999999985189999998899999987204356776167960999944
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899999998885057432222222222222222222222
Q gi|254780916|r 89 QDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 89 ~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
T Consensus 81 ~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr~ 119 (226)
T PRK09836 81 LGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 (226)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 589889999997699688636876799999999996626