HHsearch alignment for GI: 254780916 and conserved domain: PRK09862

>PRK09862 putative ATP-dependent protease; Provisional.
Probab=98.63  E-value=4e-08  Score=77.07  Aligned_cols=133  Identities=15%  Similarity=0.118  Sum_probs=93.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC-------------------------C
Q ss_conf             111111222222222222222234432048873277743679999998426754-------------------------3
Q gi|254780916|r  137 CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRA-------------------------F  191 (482)
Q Consensus       137 ~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~-------------------------~  191 (482)
T Consensus       188 ~D~~dv~Gq~~----akraleIAAAGgHnlLl~GpPG~GKTMlA~rlp~ILPpLt~~e~lEv~~I~Svag~~~~~~~~~~  263 (506)
T PRK09862        188 HDLSDVVGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQ  263 (506)
T ss_pred             CCHHHHCCCHH----HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             67565369799----99999997446886598769994598999775123899898999999999987189877775466


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC--CCCCCCC
Q ss_conf             32101234655421002433112555532211100123446671475166420018899988887764200--1123553
Q gi|254780916|r  192 FPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKI--EFFDSRG  269 (482)
Q Consensus       192 ~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~--~~~g~~~  269 (482)
T Consensus       264 rPfR~PHHs~-----S~~aliG------GG~~~~PGEISLAH~GVLFLDElpEF~r~vLe~LRqPLE~g~I~IsRa~~~~  332 (506)
T PRK09862        264 RPFRSPHHSA-----SLTAMVG------GGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKI  332 (506)
T ss_pred             CCEECCCCCC-----CHHHHHC------CCCCCCCCCEEECCCCEEEECCHHCCCHHHHHHHHHHHCCCEEEEEECCCEE
T ss_conf             8503788765-----4766637------9999999722213575788455000688899987762247759999668679


Q ss_pred             CCCCCCEEEEECCCC
Q ss_conf             212343156521433
Q gi|254780916|r  270 AIRLDVRLIFLTEKN  284 (482)
Q Consensus       270 ~~~~~~RiIa~t~~~  284 (482)
T Consensus       333 ~~PA~F~LVaAmNPC  347 (506)
T PRK09862        333 TYPARFQLVAAMNPS  347 (506)
T ss_pred             EECCHHHHEHHCCCC
T ss_conf             861533111103788