HHsearch alignment for GI: 254780916 and conserved domain: PRK09935
>PRK09935 transcriptional regulator FimZ; Provisional.
Probab=99.68 E-value=4.4e-16 Score=133.30 Aligned_cols=119 Identities=12% Similarity=0.114 Sum_probs=106.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHC-CCEEE-EECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 2883899869989999999999988-98899-9893--799998608998999978546988899999999857898399
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESY-GYDVF-IVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~-G~~v~-~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvI 84 (482)
T Consensus 2 ~p~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~lp~~~g~~~i~~i~~~~p~~~il 81 (210)
T PRK09935 2 KPASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQIQETVKVL 81 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEE
T ss_conf 97889998596999999999996298928999989999999999747999999889999988640567898738997089
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9926899999998885057432222222222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
T Consensus 82 vls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~G~ 124 (210)
T PRK09935 82 FLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILSGY 124 (210)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 9717672999999996687768867899999999999998599