HHsearch alignment for GI: 254780916 and conserved domain: PRK10360
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional.
Probab=99.57 E-value=2.2e-14 Score=121.28 Aligned_cols=115 Identities=13% Similarity=0.080 Sum_probs=100.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 88389986998999999999998-898899-98937--999986089989999785469888999999998578983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVES-YGYDVF-IVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~-~G~~v~-~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi 85 (482)
T Consensus 1 Mi~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~~~~dvvllD~~mp~~~g~~~~~~l~~---~~~viv 77 (196)
T PRK10360 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPK---GMATIM 77 (196)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHC---CCCEEE
T ss_conf 91999987979999999999812999599999899999999887449999998788788620779999843---874899
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 926899999998885057432222222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
T Consensus 78 ls~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~G~ 119 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119 (196)
T ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 973075999999997599889977899999999999998699