HHsearch alignment for GI: 254780916 and conserved domain: PRK10360

>PRK10360 DNA-binding transcriptional activator UhpA; Provisional.
Probab=99.57  E-value=2.2e-14  Score=121.28  Aligned_cols=115  Identities=13%  Similarity=0.080  Sum_probs=100.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             88389986998999999999998-898899-98937--999986089989999785469888999999998578983999
Q gi|254780916|r   10 HKRVLIIDKDDEQIKIIKDHVES-YGYDVF-IVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV   85 (482)
Q Consensus        10 ~~rILIVDDd~~~~~~l~~~L~~-~G~~v~-~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi   85 (482)
T Consensus         1 Mi~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~~~~dvvllD~~mp~~~g~~~~~~l~~---~~~viv   77 (196)
T PRK10360          1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPK---GMATIM   77 (196)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHC---CCCEEE
T ss_conf             91999987979999999999812999599999899999999887449999998788788620779999843---874899


Q ss_pred             EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             926899999998885057432222222222222222222222
Q gi|254780916|r   86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG  127 (482)
Q Consensus        86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~  127 (482)
T Consensus        78 ls~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~G~  119 (196)
T PRK10360         78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG  119 (196)
T ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf             973075999999997599889977899999999999998699