HHsearch alignment for GI: 254780916 and conserved domain: PRK10430
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional.
Probab=99.88 E-value=2.6e-22 Score=177.32 Aligned_cols=116 Identities=13% Similarity=0.190 Sum_probs=104.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHH-CCCEEEE-ECC--HHHHHH--HCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 88389986998999999999998-8988999-893--799998--60899899997854698889999999985789839
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVES-YGYDVFI-VNV--SDLSTI--SKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPI 83 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~-~G~~v~~-a~~--~al~~l--~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipv 83 (482)
T Consensus 1 MirVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~~~~~V 80 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDV 80 (239)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 98799992989999999999851899089999899999999996579998589978999999789999999985899819
Q ss_pred EEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999268999999988850574322222222222222222222
Q gi|254780916|r 84 IVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALR 125 (482)
Q Consensus 84 IiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~ 125 (482)
T Consensus 81 I~ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y~~ 122 (239)
T PRK10430 81 IVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 (239)
T ss_pred EEEEECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHH
T ss_conf 999726889999999983950304899999999999999999