HHsearch alignment for GI: 254780916 and conserved domain: PRK10816
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional.
Probab=99.86 E-value=2.8e-21 Score=170.02 Aligned_cols=117 Identities=12% Similarity=0.138 Sum_probs=110.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 838998699899999999999889889998937--999986089989999785469888999999998578983999926
Q gi|254780916|r 11 KRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTT 88 (482)
Q Consensus 11 ~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~ 88 (482)
T Consensus 1 mkILivEdd~~~~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~dlvilD~~lp~~~G~~l~~~ir~~~~~~piI~lta 80 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTA 80 (223)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCEEEEEC
T ss_conf 98999959899999999999978999999899999999997579989999799989886400120110489876899944
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899999998885057432222222222222222222222
Q gi|254780916|r 89 QDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 89 ~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
T Consensus 81 ~~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr~ 119 (223)
T PRK10816 81 RESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 456778999998699886418977789999999996655