HHsearch alignment for GI: 254780916 and conserved domain: PRK10820
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional.
Probab=100.00 E-value=0 Score=662.48 Aligned_cols=312 Identities=29% Similarity=0.521 Sum_probs=278.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 21111111122222222222222223443204887327774367999999842675433210123465542100243311
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG 213 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG 213 (482)
T Consensus 198 ~~~~~F~~iig~S~~m~~v~~~a~r~A~~d~pVLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~l~eseLFG 277 (513)
T PRK10820 198 QDVSAFSQIVAVSPKMKHVVEQARKLAMLSAPLLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPEDAVESELFG 277 (513)
T ss_pred CCCCCHHHHEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 54168777510899999999999998598998899898982499999999966887899826888998996789998638
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH
Q ss_conf 25555322111001234466714751664200188999888877642001123553212343156521433211111123
Q gi|254780916|r 214 DVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHV 293 (482)
Q Consensus 214 ~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~ 293 (482)
T Consensus 278 ~a------~~~~~G~fe~A~gGTLfLdEI~~l~~~~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRiIaaT~~dL~~lv~~g~ 351 (513)
T PRK10820 278 HA------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGL 351 (513)
T ss_pred CC------CCCCCCCEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEECCCHHHHHHHHCCC
T ss_conf 76------668897557858988999783659999999999998689799659985356778999626530999987298
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 33799988654334467787744222255667776410112233332111110001223389868999999999987438
Q gi|254780916|r 294 FRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLK 373 (482)
Q Consensus 294 fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~ 373 (482)
T Consensus 352 FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNVREL~n~iera~~~~~ 431 (513)
T PRK10820 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLSTVLTRYGWPGNVRQLKNAIYRALTQLE 431 (513)
T ss_pred CCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 50889998616725588834465569999999999999975999898479999999708999799999999999999579
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98106889545421244543223432222223344432100000000112344454325899999999999999982872
Q gi|254780916|r 374 DSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQ 453 (482)
Q Consensus 374 ~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn 453 (482)
T Consensus 432 g~~i~~~di~lp~~~~---------~--~~~~-----~----~~~----~----~~sL~e~~~~~Er~~l~~l~~~~-~~ 482 (513)
T PRK10820 432 GYELRPQDILLPDYDA---------A--TVAV-----G----EDA----M----EGSLDDITSRFERSVLTQLYRNY-PS 482 (513)
T ss_pred CCCCCHHHCCCCCCCC---------C--CCCC-----C----CCC----C----CCCHHHHHHHHHHHHHHHHHHHC-CC
T ss_conf 9853499828854344---------4--4676-----6----444----4----79999999999999999999878-89
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 789997848998899999998188814
Q gi|254780916|r 454 MSEVARRLGIGRSTLYRKIREYNIEVD 480 (482)
Q Consensus 454 ~~~aA~~LGIsR~tL~rKlk~~gi~~d 480 (482)
T Consensus 483 ~~kaAk~LGISrttL~~KlkkyGI~~k 509 (513)
T PRK10820 483 TRKLAKRLGVSHTAIANKLREYGLSQK 509 (513)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf 999999979989999999998089987