HHsearch alignment for GI: 254780916 and conserved domain: PRK10820

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional.
Probab=100.00  E-value=0  Score=662.48  Aligned_cols=312  Identities=29%  Similarity=0.521  Sum_probs=278.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf             21111111122222222222222223443204887327774367999999842675433210123465542100243311
Q gi|254780916|r  134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG  213 (482)
Q Consensus       134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG  213 (482)
T Consensus       198 ~~~~~F~~iig~S~~m~~v~~~a~r~A~~d~pVLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~l~eseLFG  277 (513)
T PRK10820        198 QDVSAFSQIVAVSPKMKHVVEQARKLAMLSAPLLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPEDAVESELFG  277 (513)
T ss_pred             CCCCCHHHHEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCC
T ss_conf             54168777510899999999999998598998899898982499999999966887899826888998996789998638


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH
Q ss_conf             25555322111001234466714751664200188999888877642001123553212343156521433211111123
Q gi|254780916|r  214 DVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHV  293 (482)
Q Consensus       214 ~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~  293 (482)
T Consensus       278 ~a------~~~~~G~fe~A~gGTLfLdEI~~l~~~~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRiIaaT~~dL~~lv~~g~  351 (513)
T PRK10820        278 HA------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGL  351 (513)
T ss_pred             CC------CCCCCCCEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEECCCHHHHHHHHCCC
T ss_conf             76------668897557858988999783659999999999998689799659985356778999626530999987298


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             33799988654334467787744222255667776410112233332111110001223389868999999999987438
Q gi|254780916|r  294 FRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLK  373 (482)
Q Consensus       294 fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~  373 (482)
T Consensus       352 FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNVREL~n~iera~~~~~  431 (513)
T PRK10820        352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLSTVLTRYGWPGNVRQLKNAIYRALTQLE  431 (513)
T ss_pred             CCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             50889998616725588834465569999999999999975999898479999999708999799999999999999579


Q ss_pred             CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             98106889545421244543223432222223344432100000000112344454325899999999999999982872
Q gi|254780916|r  374 DSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQ  453 (482)
Q Consensus       374 ~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn  453 (482)
T Consensus       432 g~~i~~~di~lp~~~~---------~--~~~~-----~----~~~----~----~~sL~e~~~~~Er~~l~~l~~~~-~~  482 (513)
T PRK10820        432 GYELRPQDILLPDYDA---------A--TVAV-----G----EDA----M----EGSLDDITSRFERSVLTQLYRNY-PS  482 (513)
T ss_pred             CCCCCHHHCCCCCCCC---------C--CCCC-----C----CCC----C----CCCHHHHHHHHHHHHHHHHHHHC-CC
T ss_conf             9853499828854344---------4--4676-----6----444----4----79999999999999999999878-89


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             789997848998899999998188814
Q gi|254780916|r  454 MSEVARRLGIGRSTLYRKIREYNIEVD  480 (482)
Q Consensus       454 ~~~aA~~LGIsR~tL~rKlk~~gi~~d  480 (482)
T Consensus       483 ~~kaAk~LGISrttL~~KlkkyGI~~k  509 (513)
T PRK10820        483 TRKLAKRLGVSHTAIANKLREYGLSQK  509 (513)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf             999999979989999999998089987