HHsearch alignment for GI: 254780916 and conserved domain: PRK10840
>PRK10840 transcriptional regulator RcsB; Provisional.
Probab=99.62 E-value=5.2e-15 Score=125.73 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=102.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHC-CCEEEE-ECCH--HHHHHHCCCCCEEEEECCCCC---CCHHHHHHHHHHHCCCCC
Q ss_conf 883899869989999999999988-988999-8937--999986089989999785469---888999999998578983
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESY-GYDVFI-VNVS--DLSTISKIQVNVIFLSLINCE---DDKENILKNIVDKIPIVP 82 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~-G~~v~~-a~~~--al~~l~~~~~dlillD~~mP~---~dGlell~~i~~~~p~ip 82 (482)
T Consensus 3 ~irIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~~~ 82 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLS 82 (216)
T ss_pred CCEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCE
T ss_conf 88899988979999999999815999689998799999999986239898998267799988789999999998589980
Q ss_pred EEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999268999999988850574322222222222222222222
Q gi|254780916|r 83 IIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALR 125 (482)
Q Consensus 83 vIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~ 125 (482)
T Consensus 83 vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~ 125 (216)
T PRK10840 83 IIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 8998477878999999858974899878999999999999987