HHsearch alignment for GI: 254780916 and conserved domain: PRK10955

>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional.
Probab=99.86  E-value=8.5e-22  Score=173.67  Aligned_cols=117  Identities=17%  Similarity=0.291  Sum_probs=107.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             8838998699899999999999889889998937--99998608998999978546988899999999857898399992
Q gi|254780916|r   10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQT   87 (482)
Q Consensus        10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT   87 (482)
T Consensus         1 M~kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~~~DlvilDi~LP~~dG~~l~~~iR~~-~~~PII~lt   78 (232)
T PRK10955          1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDTLKALRQT-HQTPVIMLT   78 (232)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCEEECC-CCCCEEEEE
T ss_conf             988999969899999999999888999999899999999964-898999991899988867230124407-888789980


Q ss_pred             CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             68999999988850574322222222222222222222222
Q gi|254780916|r   88 TQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGV  128 (482)
Q Consensus        88 ~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~  128 (482)
T Consensus        79 a~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR~~  119 (232)
T PRK10955         79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH  119 (232)
T ss_pred             CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf             55676889999976975763389998999999999976154