HHsearch alignment for GI: 254780916 and conserved domain: PRK10955
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional.
Probab=99.86 E-value=8.5e-22 Score=173.67 Aligned_cols=117 Identities=17% Similarity=0.291 Sum_probs=107.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8838998699899999999999889889998937--99998608998999978546988899999999857898399992
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQT 87 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT 87 (482)
T Consensus 1 M~kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~~~DlvilDi~LP~~dG~~l~~~iR~~-~~~PII~lt 78 (232)
T PRK10955 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDTLKALRQT-HQTPVIMLT 78 (232)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCEEECC-CCCCEEEEE
T ss_conf 988999969899999999999888999999899999999964-898999991899988867230124407-888789980
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68999999988850574322222222222222222222222
Q gi|254780916|r 88 TQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGV 128 (482)
Q Consensus 88 ~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~ 128 (482)
T Consensus 79 a~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR~~ 119 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 (232)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 55676889999976975763389998999999999976154