HHsearch alignment for GI: 254780916 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=98.00 E-value=2.6e-06 Score=64.21 Aligned_cols=154 Identities=16% Similarity=0.230 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC-------CCCCCCCCCCCCCCCCCCC
Q ss_conf 111111112222222222222222344320488732777436799999984267-------5433210123465542100
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK-------RAFFPFFIVNCGMIDQDKI 207 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~-------r~~~~fi~v~c~~~~~~~~ 207 (482)
T Consensus 181 r~gklDPviGR~~Ei~r~i~iL~R--r~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~L----- 253 (758)
T PRK11034 181 RVGGIDPLIGREKELERAIQVLCR--RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----- 253 (758)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH-----
T ss_conf 828999873848999999999976--3258960216999869999999999997389976558988998458778-----
Q ss_pred HHHHHCCCCCCCCCCCCCC----CCCCCCCCCEEEECCCCHHH---------HHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 2433112555532211100----12344667147516642001---------8899988887764200112355321234
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFL----GKFIEANGGTIVLEEPDALP---------LAVQGRIYNFIETGKIEFFDSRGAIRLD 274 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~----g~~~~a~~Gtl~l~ei~~L~---------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 274 (482)
T Consensus 254 ---iAGtk--yRGefEeRlk~vi~e~~~~~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG-------------~ 315 (758)
T PRK11034 254 ---LAGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-------------K 315 (758)
T ss_pred ---HCCCC--CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCC-------------C
T ss_conf ---61686--41549999999999998579859998043442268876777646788745787469-------------7
Q ss_pred CEEEEECCCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 31565214332111111233379--99886543344677877442
Q gi|254780916|r 275 VRLIFLTEKNLLPQVKSHVFRKD--LYYRISVFLINISTLRSRSE 317 (482)
Q Consensus 275 ~RiIa~t~~~L~~~~~~g~fr~d--Ly~rL~~~~i~iPpLReR~e 317 (482)
T Consensus 316 l~~IgaTT~~EYr----k~iekD~AL~RRFq~V~V~EPs~e~t~~ 356 (758)
T PRK11034 316 IRVIGSTTYQEFS----NIFEKDRALARRFQKIDITEPSIEETVQ 356 (758)
T ss_pred CEEEEECCHHHHH----HCCCCCHHHHHCCCEEECCCCCHHHHHH
T ss_conf 2399943779987----5032147888428265318999899999