HHsearch alignment for GI: 254780916 and conserved domain: PRK11131
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=95.57 E-value=0.0087 Score=39.31 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=36.7
Q ss_pred HHHHHC----CCCCEEEEECC-CCCCCH---HHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
Q ss_conf 999860----89989999785-469888---9999999985789839999268999999988
Q gi|254780916|r 45 LSTISK----IQVNVIFLSLI-NCEDDK---ENILKNIVDKIPIVPIIVQTTQDNIKILNCF 98 (482)
Q Consensus 45 l~~l~~----~~~dlillD~~-mP~~dG---lell~~i~~~~p~ipvIiiT~~~~~~~~~~a 98 (482)
T Consensus 175 L~e~~~d~~L~~y~~iIiDEaHERsl~~D~LLg~Lk~ll~~R~dLKvIimSATid~e~fs~y 236 (1295)
T PRK11131 175 LAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSRH 236 (1295)
T ss_pred HHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf 99862099878877799868556880199999999999833999889995586897999965