HHsearch alignment for GI: 254780916 and conserved domain: PRK11131

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=95.57  E-value=0.0087  Score=39.31  Aligned_cols=54  Identities=15%  Similarity=0.239  Sum_probs=36.7

Q ss_pred             HHHHHC----CCCCEEEEECC-CCCCCH---HHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
Q ss_conf             999860----89989999785-469888---9999999985789839999268999999988
Q gi|254780916|r   45 LSTISK----IQVNVIFLSLI-NCEDDK---ENILKNIVDKIPIVPIIVQTTQDNIKILNCF   98 (482)
Q Consensus        45 l~~l~~----~~~dlillD~~-mP~~dG---lell~~i~~~~p~ipvIiiT~~~~~~~~~~a   98 (482)
T Consensus       175 L~e~~~d~~L~~y~~iIiDEaHERsl~~D~LLg~Lk~ll~~R~dLKvIimSATid~e~fs~y  236 (1295)
T PRK11131        175 LAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSRH  236 (1295)
T ss_pred             HHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf             99862099878877799868556880199999999999833999889995586897999965