HHsearch alignment for GI: 254780916 and conserved domain: PRK11388
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional.
Probab=100.00 E-value=0 Score=637.89 Aligned_cols=315 Identities=30% Similarity=0.481 Sum_probs=285.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 11111111222222222222222234432048873277743679999998426754332101234655421002433112
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGD 214 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~ 214 (482)
T Consensus 320 ~~~~f~~l~g~s~~~~~~~~~a~~~a~~~~pVLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~~~~~e~elfG~ 399 (639)
T PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGRQAAKSSFPILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLPDEALAEEFLGS 399 (639)
T ss_pred CCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCC
T ss_conf 88885544679999999999999996889968988989810999999999557778998189878989846789987387
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 55553221110012344667147516642001889998888776420011235532123431565214332111111233
Q gi|254780916|r 215 VDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 215 ~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
T Consensus 400 ~~~~--~~~g~~g~~e~A~gGTL~LdeI~~lp~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiiaat~~~l~~~v~~g~f 477 (639)
T PRK11388 400 DRTD--SENGRLSKFELAHGGTLFLEKVEYLSVELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRF 477 (639)
T ss_pred CCCC--CCCCCCCHHHCCCCCEEEECCHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEECCHHHHHHHHCCCC
T ss_conf 7676--43466862440369828846726499999999999986593785699946664279997364508999874985
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 37999886543344677877442222556677764101122333321111100012233898689999999999874389
Q gi|254780916|r 295 RKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKD 374 (482)
Q Consensus 295 r~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~ 374 (482)
T Consensus 478 r~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~l~~~~~~~~~~-~~ls~~a~~~L~~y~WPGNvrEL~nvl~~a~~~~~~ 556 (639)
T PRK11388 478 SRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSYRWPGNDFELRSVIENLALSSDN 556 (639)
T ss_pred HHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 4999987674410573323253439999999999999971999-998999999997289997999999999999983899
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 81068895454212445432234322222233444321000000001123444543258999999999999999828727
Q gi|254780916|r 375 SHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQM 454 (482)
Q Consensus 375 ~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn~ 454 (482)
T Consensus 557 ~~I~~~~Lp~~~~~~~~~~~~~-----------~~------------~------~~~~~~l~~~Er~~I~~aL~~~~gN~ 607 (639)
T PRK11388 557 GRIRLSDLPEHLFTEQATDDVS-----------AP------------R------LSTSLSLAELEKQAIINAAQVCGGRI 607 (639)
T ss_pred CCCCHHHCCHHHHHCCCCCCCC-----------CC------------C------CCCCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 8426797808775157777777-----------67------------7------77656799999999999999949979
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf 899978489988999999981888144
Q gi|254780916|r 455 SEVARRLGIGRSTLYRKIREYNIEVDS 481 (482)
Q Consensus 455 ~~aA~~LGIsR~tL~rKlk~~gi~~d~ 481 (482)
T Consensus 608 s~aA~~LGIsR~TLYRKlk~~gI~~~~ 634 (639)
T PRK11388 608 QEMAALLGIGRTTLWRKMKQHGIDANQ 634 (639)
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCHHH
T ss_conf 999999898999999999994969788