HHsearch alignment for GI: 254780916 and conserved domain: PRK11477
>PRK11477 carbohydrate diacid transcriptional activator CdaR; Provisional.
Probab=94.94 E-value=0.036 Score=34.95 Aligned_cols=32 Identities=22% Similarity=0.048 Sum_probs=28.8
Q ss_pred HHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999828727899978489988999999981
Q gi|254780916|r 444 GLAMKLYRAQMSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 444 ~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
T Consensus 327 L~~yfe~n~si~~tA~~L~IHRNTL~YRL~KI 358 (385)
T PRK11477 327 LAAWFRHNVQPLATSKALFIHRNTLEYRLNRI 358 (385)
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999809999999998486450699999999