HHsearch alignment for GI: 254780916 and conserved domain: PRK11477

>PRK11477 carbohydrate diacid transcriptional activator CdaR; Provisional.
Probab=94.94  E-value=0.036  Score=34.95  Aligned_cols=32  Identities=22%  Similarity=0.048  Sum_probs=28.8

Q ss_pred             HHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99999828727899978489988999999981
Q gi|254780916|r  444 GLAMKLYRAQMSEVARRLGIGRSTLYRKIREY  475 (482)
Q Consensus       444 ~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~  475 (482)
T Consensus       327 L~~yfe~n~si~~tA~~L~IHRNTL~YRL~KI  358 (385)
T PRK11477        327 LAAWFRHNVQPLATSKALFIHRNTLEYRLNRI  358 (385)
T ss_pred             HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99999809999999998486450699999999