HHsearch alignment for GI: 254780916 and conserved domain: PRK12377
>PRK12377 putative replication protein; Provisional.
Probab=97.49 E-value=6.9e-05 Score=54.18 Aligned_cols=146 Identities=15% Similarity=0.156 Sum_probs=78.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC----CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 1111111222222222222222234----432048873277743679999998426754332101234655421002433
Q gi|254780916|r 136 HCALDSLIAVSPAMIQVVDLARKAG----DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFL 211 (482)
Q Consensus 136 ~~~~~~LiG~S~~m~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~l 211 (482)
T Consensus 70 ~~~f~ny~~~~~~~~~a~~~a~~~~~~F~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~----dLv-~~L 144 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP----DVM-SRL 144 (248)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH----HHH-HHH
T ss_conf 386345645787899999999999998731886089989999878899999999999879969998899----999-999
Q ss_pred HCC-CCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 112-555532211100123446671475166420018899--98888776420011235532123431565214332111
Q gi|254780916|r 212 FGD-VDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQ--GRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQ 288 (482)
Q Consensus 212 FG~-~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q--~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~ 288 (482)
T Consensus 145 ~~a~~~g~~~--~k~l~~l~--~~dLLIIDElG~~~~s~~~~~llfqlI~~R-y~~~---ks------~IiTTNL~f~ew 210 (248)
T PRK12377 145 HESYDNGQSG--EKFLQELC--KVDLLVLDEIGIQRETKNEQVVLNQIIDRR-TASM---RS------VGMLTNLNHEAM 210 (248)
T ss_pred HHHHHCCCCH--HHHHHHHH--CCCEEEEHHCCCCCCCHHHHHHHHHHHHHH-HHCC---CC------EEEECCCCHHHH
T ss_conf 9999848509--99999973--389898600057889867999999999999-8557---98------689758997799
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 11123337999886
Q gi|254780916|r 289 VKSHVFRKDLYYRI 302 (482)
Q Consensus 289 ~~~g~fr~dLy~rL 302 (482)
T Consensus 211 ~~--ilgdailDRL 222 (248)
T PRK12377 211 ST--LLGERVMDRM 222 (248)
T ss_pred HH--HHHHHHHHHH
T ss_conf 88--8759999999