HHsearch alignment for GI: 254780916 and conserved domain: PRK12422
>PRK12422 chromosomal replication initiation protein; Provisional.
Probab=98.40 E-value=6.6e-07 Score=68.42 Aligned_cols=220 Identities=16% Similarity=0.168 Sum_probs=125.8
Q ss_pred CCCCCCCCCC-CCCCCCCCC--CCCCCCCCCC----CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2211111111-222222222--2222222344----32048873277743679999998426754332101234655421
Q gi|254780916|r 133 ENEHCALDSL-IAVSPAMIQ--VVDLARKAGD----CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQD 205 (482)
Q Consensus 133 ~~~~~~~~~L-iG~S~~m~~--v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~ 205 (482)
T Consensus 104 lNp~ytFd~FVvG~~N~lA~~aa~~va~~~~~~~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yv-----tae 178 (455)
T PRK12422 104 VDPEMTFANFLVTPENDLPFRILQEFAKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYV-----SSE 178 (455)
T ss_pred CCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE-----CHH
T ss_conf 897783558331586099999999998375535887678758878999978999999999853799869997-----499
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHH--HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 002433112555532211100123446671475166420018--899988887764200112355321234315652143
Q gi|254780916|r 206 KIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPL--AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEK 283 (482)
Q Consensus 206 ~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~--~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~ 283 (482)
T Consensus 179 ~F~~~~v~ai~--~~~~~~Fr~~yr~~--DvLLIDDIQfl~gK~~tqeEff~tfN~L~----------~~~KQIVitsDr 244 (455)
T PRK12422 179 LFTEHLVSAIR--SGEMQRFRSFYRNV--DALFIEDIEVFSGKGATQEEFFHTFNSLH----------TEGKLIVISSSY 244 (455)
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHCC--CEEEEEHHHHHHCCHHHHHHHHHHHHHHH----------HCCCEEEEECCC
T ss_conf 99999999997--58899999999638--87763147887284889999999999999----------859969996898
Q ss_pred CCCCCCCHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 32111111233379998865-43--3446778774422225566777641011223333211111000122338986899
Q gi|254780916|r 284 NLLPQVKSHVFRKDLYYRIS-VF--LINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 (482)
Q Consensus 284 ~L~~~~~~g~fr~dLy~rL~-~~--~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvRE 360 (482)
T Consensus 245 ~P~el~---~l~~RL~SRf~~GL~v~I~~Pd~etr~~--------Il~~k~~~~~~---~l~~ev~~~i-A~~i~~niRe 309 (455)
T PRK12422 245 APGDLK---AMEERLISRFEWGIAIPIHPLTREGLRS--------FLMRQAEQLSI---RIEETALDFL-IQALSSNVKT 309 (455)
T ss_pred CHHHHH---HHHHHHHHHHHCCEEECCCCCCHHHHHH--------HHHHHHHHCCC---CCCHHHHHHH-HHHHHHHHHH
T ss_conf 957651---2689999886376132168999899999--------99999987188---8844689999-9997551799
Q ss_pred HHHHHHHHHHH-----CCCCCCCHHHHHHHH
Q ss_conf 99999999874-----389810688954542
Q gi|254780916|r 361 LKNILLRAVIG-----LKDSHLTEDRFVLLL 386 (482)
Q Consensus 361 L~n~i~r~~i~-----~~~~~i~~~~~~~~l 386 (482)
T Consensus 310 LeGal~~l~~~~~~~~~~~~~i~~~~~~~~l 340 (455)
T PRK12422 310 LLHALTLLAKRVAYKKLSHQLLYEDDIKALL 340 (455)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9999999999999871568836499999999