HHsearch alignment for GI: 254780916 and conserved domain: PRK13765
>PRK13765 ATP-dependent protease Lon; Provisional.
Probab=99.50 E-value=2.2e-13 Score=114.20 Aligned_cols=205 Identities=12% Similarity=0.134 Sum_probs=133.6
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC-------CC-CCCCCCC-CCCCCCCCCCCEEEECC
Q ss_conf 777436799999984267543321012346554210024331125-------55-5322111-00123446671475166
Q gi|254780916|r 171 EFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDV-------DL-QTKNSAQ-FLGKFIEANGGTIVLEE 241 (482)
Q Consensus 171 e~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~-------~~-~~~~~~~-~~g~~~~a~~Gtl~l~e 241 (482)
T Consensus 161 ~~~~~~~~~pkllv~~~~~~~aPfvdAtg------a~a~aLlGdVrHdP~qsGGlgTPah~Rv~aGAiHkA~gGvL~IDe 234 (637)
T PRK13765 161 VMPKEDAMVPKLLVSNSDKKTAPFVDATG------AHAGALLGDVRHDPFQSGGLETPAHERVEAGAIHKAHKGVLFIDE 234 (637)
T ss_pred HHCCCCCCCCCEEECCCCCCCCCEECCCC------CCHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCEEEEEH
T ss_conf 62355355764012477777898330787------444665177424863348989996100026612113585699844
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCC----------CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH--HHHHHHH
Q ss_conf 42001889998888776420011235----------53212343156521433211111123337999886--5433446
Q gi|254780916|r 242 PDALPLAVQGRIYNFIETGKIEFFDS----------RGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRI--SVFLINI 309 (482)
Q Consensus 242 i~~L~~~~Q~~Ll~~l~~~~~~~~g~----------~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL--~~~~i~i 309 (482)
T Consensus 235 i~~L~~~~q~~Ll~alq~~k~~I~g~~e~SsgA~v~tepvP~Df~lV~aGn~d~~~~m-----~palrsri~g~gyev~~ 309 (637)
T PRK13765 235 INTLRLESQQSLLTAMQEKKYPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDAIENM-----HPALRSRIRGYGYEVYM 309 (637)
T ss_pred HHHCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHC-----CHHHHHHHHCCCEEEEE
T ss_conf 5647988999999999659153236886667762578986613699995372766643-----99888651047749982
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCC-------CHHHHHHHHHHHH---HHCCCCCC
Q ss_conf 77877442222556677764101122333321111100012233--898-------6899999999998---74389810
Q gi|254780916|r 310 STLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYP--WID-------NVQELKNILLRAV---IGLKDSHL 377 (482)
Q Consensus 310 PpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~--WPG-------NvREL~n~i~r~~---i~~~~~~i 377 (482)
T Consensus 310 ~~~m~dt~enr~k~arfiaqev~~dg~-iPhfdr~AVaeII~eA~R~AG~k~kLTLrLReL~~LIReAgdiA~~eg~~~V 388 (637)
T PRK13765 310 NDTMEDTPENRKKLVRFVAQEVKRDGK-IPHFDREAVEEIIREARRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGADLV 388 (637)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 356778788999999999999974388-8999989999999999974054566305289887499998899997599966
Q ss_pred CHHHHHHHHC
Q ss_conf 6889545421
Q gi|254780916|r 378 TEDRFVLLLS 387 (482)
Q Consensus 378 ~~~~~~~~l~ 387 (482)
T Consensus 389 ta~hV~~A~~ 398 (637)
T PRK13765 389 TAEHVLEAKK 398 (637)
T ss_pred CHHHHHHHHH
T ss_conf 4999999999