HHsearch alignment for GI: 254780916 and conserved domain: PRK13837
>PRK13837 two-component VirA-like sensor kinase; Provisional.
Probab=99.72 E-value=1.1e-16 Score=137.63 Aligned_cols=120 Identities=17% Similarity=0.262 Sum_probs=106.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 28838998699899999999999889889998937--99998608--998999978546988899999999857898399
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKI--QVNVIFLSLINCEDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~--~~dlillD~~mP~~dGlell~~i~~~~p~ipvI 84 (482)
T Consensus 698 ~ge~ILvVdDe~~vr~~~~~~L~~lGY~v~~a~~~~~Al~~~~~~~~~~DLvltD-~~p~~~g~~~~~~l~~~~p~lpVi 776 (831)
T PRK13837 698 NGETVLLVEPDDALLERYEEKLAALGYEPVGFSTLSAAIAWISKDGKRFDLVLVD-QPSLGDSQLAIAALHAAAPTLPII 776 (831)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEC-CCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 9977999859889999999999967996888689999999998389985399988-999998799999998618997499
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9926899999998885057432222222222222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVP 130 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~ 130 (482)
T Consensus 777 l-sg~~~~~~~~~~~~~~~~~fL~KPfs~~~LA~avR~aL~~~r~~ 821 (831)
T PRK13837 777 L-AGSSLKMAAREALATAIAEILPKPISSRTLAYALRTALATARAA 821 (831)
T ss_pred E-ECCCCHHHHHCHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9-76881443311022266706509999999999999998488887