HHsearch alignment for GI: 254780916 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=92.18 E-value=0.056 Score=33.60 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 2222222344320488732777436799999984267543321012
Q gi|254780916|r 152 VVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIV 197 (482)
Q Consensus 152 v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v 197 (482)
T Consensus 151 ~~~fL~~aV~~r~NIlIsGgTGSGKTTllnALl~~IP~-~eRIvtI 195 (343)
T PRK13851 151 LEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPP-QERLITI 195 (343)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCC-CCCEEEE
T ss_conf 99999999976988999888986199999999962896-5527996