HHsearch alignment for GI: 254780916 and conserved domain: PRK13856
>PRK13856 two-component response regulator VirG; Provisional.
Probab=99.85 E-value=1.2e-20 Score=165.65 Aligned_cols=118 Identities=23% Similarity=0.215 Sum_probs=106.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8838998699899999999999889889998937--99998608998999978546988899999999857898399992
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQT 87 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT 87 (482)
T Consensus 1 M~~ILlVEDD~~l~~~l~~~L~~~g~~v~~a~~~~~~~~~l~~~~~DlvIlDi~lp~~~Gl~~~~~ir~~~-~~piiilt 79 (241)
T PRK13856 1 MKHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSETVDVVVVDLNLGREDGLEIVRSLATKS-DVPIIIIS 79 (241)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCC-CCCEEEEE
T ss_conf 99899996989999999999987799999989999999998659999999969998766134555640369-97369997
Q ss_pred C-CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6-8999999988850574322222222222222222222222
Q gi|254780916|r 88 T-QDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGV 128 (482)
Q Consensus 88 ~-~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~ 128 (482)
T Consensus 80 ~~~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~~~lrr~~ 121 (241)
T PRK13856 80 GDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVRP 121 (241)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 267878999999876998899777677799999999987454