HHsearch alignment for GI: 254780916 and conserved domain: TIGR00382

>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=98.45  E-value=4.9e-07  Score=69.39  Aligned_cols=200  Identities=16%  Similarity=0.123  Sum_probs=113.5

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHH-CCCCCEEEEECCCCH----HHHHHHHHCCCCCCCCCCCCCCCCCCC-------
Q ss_conf             99899997854698889999999985-789839999268999----999988850574322222222222222-------
Q gi|254780916|r   52 QVNVIFLSLINCEDDKENILKNIVDK-IPIVPIIVQTTQDNI----KILNCFLYNRISKFFLNLVSRKQLCDS-------  119 (482)
Q Consensus        52 ~~dlillD~~mP~~dGlell~~i~~~-~p~ipvIiiT~~~~~----~~~~~a~~~g~~d~l~KP~~~~~L~~~-------  119 (482)
T Consensus        35 g~~VyIC~e------C~~lc~~~l~e~~~~~~~~~~gerd~~~~~~~~~~~~~~~~~~~~lP~P~eik~~LD~YVIGQe~  108 (452)
T TIGR00382        35 GPGVYICDE------CIELCHDILEEELNSLLALKTGERDGTRLRRKESKEVEEELELSELPTPKEIKAHLDEYVIGQEQ  108 (452)
T ss_pred             CCCCEECHH------HHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCC
T ss_conf             898227512------89988887766542000000254310235654202456666652478827999972136123101


Q ss_pred             --------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             --------222222222222222111111112222222222222222344320488732777436799999984267543
Q gi|254780916|r  120 --------IICALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAF  191 (482)
Q Consensus       120 --------i~~al~~~~~~~~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~  191 (482)
T Consensus       109 AKKVLsVAVYNHYKRl~~~~~n~~~d~~D-----~n---velehleeVEL~KSNILLiGPTGSGKTLLAqTLA~~---L~  177 (452)
T TIGR00382       109 AKKVLSVAVYNHYKRLNLKEKNKKSDNGD-----SN---VELEHLEEVELSKSNILLIGPTGSGKTLLAQTLARI---LN  177 (452)
T ss_pred             CCEEEEEEEHHHHHHHHHHHHCCCCCCCC-----CH---HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH---CC
T ss_conf             05254324112466653243045558840-----00---235444443330066245468885268999999987---38


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC---------CCCCCCCCCCEEEECCCCHHHH--------------H
Q ss_conf             3210123465542100243311255553221110---------0123446671475166420018--------------8
Q gi|254780916|r  192 FPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQF---------LGKFIEANGGTIVLEEPDALPL--------------A  248 (482)
Q Consensus       192 ~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~---------~g~~~~a~~Gtl~l~ei~~L~~--------------~  248 (482)
T Consensus       178 VPfAiADATtLTEA-------GYVG----EDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSGEG  246 (452)
T TIGR00382       178 VPFAIADATTLTEA-------GYVG----EDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSENPSITRDVSGEG  246 (452)
T ss_pred             CCEEECCHHHHHCC-------CCCC----CCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCCCEEEEEECCCH
T ss_conf             87421111102006-------6424----228899999987414552452785089842231012157780112217554


Q ss_pred             HHHHHHHHHHHHHCC---CCCCCCC--------CCCCCEEEEE
Q ss_conf             999888877642001---1235532--------1234315652
Q gi|254780916|r  249 VQGRIYNFIETGKIE---FFDSRGA--------IRLDVRLIFL  280 (482)
Q Consensus       249 ~Q~~Ll~~l~~~~~~---~~g~~~~--------~~~~~RiIa~  280 (482)
T Consensus       247 VQQALLKi~E-GTvA~vPPqGGRKHP~~~~iqiDTs~ILFICG  288 (452)
T TIGR00382       247 VQQALLKIIE-GTVANVPPQGGRKHPQQEFIQIDTSNILFICG  288 (452)
T ss_pred             HHHHHHHHHH-CCEEEECCCCCCCCCCCCEEEECCCCEEEEEC
T ss_conf             9999998760-32343175448868865768864764001105