HHsearch alignment for GI: 254780916 and conserved domain: TIGR00635
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=98.70 E-value=4.5e-08 Score=76.69 Aligned_cols=241 Identities=18% Similarity=0.242 Sum_probs=134.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC----CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 111112222222222222222344----3204887327774367999999842675433210123465542100243311
Q gi|254780916|r 138 ALDSLIAVSPAMIQVVDLARKAGD----CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG 213 (482)
Q Consensus 138 ~~~~LiG~S~~m~~v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG 213 (482)
T Consensus 2 ~L~eFiGQ~~vk~~L~l~I~-AAk~R~e~LDH~LL~GPPGLGKTTLA~IiA~------E--mg~~l~iTsGP~L~----- 67 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIE-AAKMRQEALDHLLLYGPPGLGKTTLAHIIAN------E--MGVNLKITSGPALE----- 67 (305)
T ss_pred CCHHCCCCHHHHHHHHHHHH-HHHHCCCCCCCEEEECCCCCCHHHHHHHHHH------H--HCCCCEEEECCCCC-----
T ss_conf 80110582889999999999-9982489734166317568746789999999------8--38932674067554-----
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCC-C---CCCCCCC---CCEEEEECCCCC
Q ss_conf 25555322111001234-46671475166420018899988887764200112-3---5532123---431565214332
Q gi|254780916|r 214 DVDLQTKNSAQFLGKFI-EANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFF-D---SRGAIRL---DVRLIFLTEKNL 285 (482)
Q Consensus 214 ~~~~~~~~~~~~~g~~~-~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~-g---~~~~~~~---~~RiIa~t~~~L 285 (482)
T Consensus 68 -------kPgDlaaiLt~L~~gDVLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR~- 139 (305)
T TIGR00635 68 -------KPGDLAAILTNLEEGDVLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA- 139 (305)
T ss_pred -------CHHHHHHHHHHCCCCCEEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCC-
T ss_conf -------757899999705689631012565048334531053001217877871289852576068694420000347-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-----
Q ss_conf 11111123337999886543344677877442222556-------677764101122333321111100012233-----
Q gi|254780916|r 286 LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLV-------HFFLQSFCTKNAIKQISISDKALSLLTKYP----- 353 (482)
Q Consensus 286 ~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~-------~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~----- 353 (482)
T Consensus 140 ------G~lt--------------~PLrdRFG~~~rl~fY~~~EL~~Iv~R~A~~L~~---ei~~~~a~~IArrSRGTPR 196 (305)
T TIGR00635 140 ------GMLT--------------SPLRDRFGIILRLEFYTPEELAEIVSRSAGLLNI---EIEQEAALEIARRSRGTPR 196 (305)
T ss_pred ------CCCC--------------CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHCCCCHH
T ss_conf ------7410--------------3133454474540268987899998753344143---0077899999875478637
Q ss_pred -------CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf -------8986899999999998743898106889545421244543223432222223344432100000000112344
Q gi|254780916|r 354 -------WIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAI 426 (482)
Q Consensus 354 -------WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (482)
T Consensus 197 IAnRLLRR---VRDfA~V-------~~~~~I~~~i~~~AL~~-------------------------------------L 229 (305)
T TIGR00635 197 IANRLLRR---VRDFAQV-------RGQGVITRDIALKALEM-------------------------------------L 229 (305)
T ss_pred HHHHHHHH---HHHHHHH-------HCCCCCCHHHHHHHHHH-------------------------------------H
T ss_conf 88877676---6448887-------26787388999999886-------------------------------------2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHCCCHHHHHHHH
Q ss_conf 454325899999999999999982872---7899978489988999999
Q gi|254780916|r 427 GQDGEVRRLSDIEKEIIGLAMKLYRAQ---MSEVARRLGIGRSTLYRKI 472 (482)
Q Consensus 427 ~~~~~~~~l~e~E~~~I~~aL~~~~Gn---~~~aA~~LGIsR~tL~rKl 472 (482)
T Consensus 230 ~--iD~~GLd~~D~~~L~~li~~f~GGPVGl~tlA~a~GEd~~TiEdv~ 276 (305)
T TIGR00635 230 D--IDELGLDEIDRKLLSVLIEKFQGGPVGLDTLAAALGEDADTIEDVY 276 (305)
T ss_pred C--CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHCCC
T ss_conf 5--3330057998999999998628985238989988557511142034