HHsearch alignment for GI: 254780916 and conserved domain: TIGR01242

>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=98.43  E-value=3.7e-07  Score=70.22  Aligned_cols=213  Identities=17%  Similarity=0.214  Sum_probs=123.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             222111111112222222222222222344-----------320488732777436799999984267543321012346
Q gi|254780916|r  132 QENEHCALDSLIAVSPAMIQVVDLARKAGD-----------CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCG  200 (482)
Q Consensus       132 ~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~-----------~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~  200 (482)
T Consensus       114 ~E~P~V~y~diGGL~~Q~~E~~E~v~LPlk~PeLF~~vGI~PPKGvLLyGPPGtGKTLlAKAvA~e---t~ATFIrvVgS  190 (364)
T TIGR01242       114 EERPNVSYEDIGGLEKQIREIREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE---TNATFIRVVGS  190 (364)
T ss_pred             ECCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCC---CCCEEEEEEHH
T ss_conf             217823340267878999999888734688831677628898986570075797688999986314---55126886044


Q ss_pred             CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC---CCCEEEECCCCHH-----------HHHHHHHHHHHHHH-HHCCCC
Q ss_conf             55421002433112555532211100123446---6714751664200-----------18899988887764-200112
Q gi|254780916|r  201 MIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEA---NGGTIVLEEPDAL-----------PLAVQGRIYNFIET-GKIEFF  265 (482)
Q Consensus       201 ~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a---~~Gtl~l~ei~~L-----------~~~~Q~~Ll~~l~~-~~~~~~  265 (482)
T Consensus       191 El----V-~KyIGE-----GAr-LV~~~F~LAkEKaPsIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~r  259 (364)
T TIGR01242       191 EL----V-RKYIGE-----GAR-LVREVFELAKEKAPSIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPR  259 (364)
T ss_pred             HH----H-HHHHCC-----HHH-HHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             44----4-444133-----168-999999985306981686101333543211467787315788999999752488876


Q ss_pred             CCCCCCCCCCEEEEECCCC-C--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             3553212343156521433-2--111111233379998865433446778774422225566777641011223333211
Q gi|254780916|r  266 DSRGAIRLDVRLIFLTEKN-L--LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISIS  342 (482)
Q Consensus       266 g~~~~~~~~~RiIa~t~~~-L--~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls  342 (482)
T Consensus       260 g-------~VkviaATNR~DilDPA~LRPGRFDR-------~IEVPlP~~~GR~e-I-------lkiHTr~~~la-~dVd  316 (364)
T TIGR01242       260 G-------NVKVIAATNRPDILDPAILRPGRFDR-------IIEVPLPDFEGRLE-I-------LKIHTRKMKLA-EDVD  316 (364)
T ss_pred             C-------CEEEEEECCCCHHCCCCCCCCCCCCC-------EEECCCCCCCCHHH-H-------HHHHHCCCCCC-CCCC
T ss_conf             7-------61688720762020432148886132-------57316978322056-6-------55521000012-3568


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCCCCCHHHHHH
Q ss_conf             11100012233898689999999999874---3898106889545
Q gi|254780916|r  343 DKALSLLTKYPWIDNVQELKNILLRAVIG---LKDSHLTEDRFVL  384 (482)
Q Consensus       343 ~~a~~~L~~y~WPGNvREL~n~i~r~~i~---~~~~~i~~~~~~~  384 (482)
T Consensus       317 l~~~A~~TeG-~s--GAdlKAi~tEAG~~AIR~~r~~vT~~Df~k  358 (364)
T TIGR01242       317 LEAIAKLTEG-AS--GADLKAICTEAGMFAIREERDYVTMDDFLK  358 (364)
T ss_pred             HHHHHHHHCC-CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7999987478-86--630423434620477774456766999999