HHsearch alignment for GI: 254780916 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=96.76 E-value=0.00091 Score=46.25 Aligned_cols=129 Identities=19% Similarity=0.169 Sum_probs=75.2
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 22222222234432048873277743679999998426754332101234655421002433112555532211100123
Q gi|254780916|r 150 IQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKF 229 (482)
Q Consensus 150 ~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~ 229 (482)
T Consensus 564 ~~~f~k~G~--~PP~Gvll~GPPGtGktllakava~es~---anfi~v~GPe~-----lskWvGese~---~ir~if~~a 630 (980)
T TIGR01243 564 PEVFEKLGI--RPPKGVLLFGPPGTGKTLLAKAVATESG---ANFIAVRGPEI-----LSKWVGESEK---AIREIFRKA 630 (980)
T ss_pred HHHHHHCCC--CCCCCEEEECCCCCCHHHHHHHHHHCCC---CCEEEECCCHH-----HHHHHCHHHH---HHHHHHHHH
T ss_conf 589986078--8997348746898616888887740145---64677407312-----2344032479---999999986
Q ss_pred CCCCCCEEEECCCCHHHHHH---------HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC---CCCCCHHHHHH
Q ss_conf 44667147516642001889---------998888776420011235532123431565214332---11111123337
Q gi|254780916|r 230 IEANGGTIVLEEPDALPLAV---------QGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNL---LPQVKSHVFRK 296 (482)
Q Consensus 230 ~~a~~Gtl~l~ei~~L~~~~---------Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L---~~~~~~g~fr~ 296 (482)
T Consensus 631 rq~aP~~~f~deidaiaP~rG~~~~~~~vtd~~~nqll----~e~dG~-~~~~~vvvi~atnrPdi~dPallrPGr~dr 704 (980)
T TIGR01243 631 RQAAPAIIFFDEIDAIAPARGASLDEKGVTDRIVNQLL----TELDGL-EELSDVVVIAATNRPDILDPALLRPGRLDR 704 (980)
T ss_pred HHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHH----HHHHCC-CCCCCEEEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 41287378730211105412442100102689999999----864044-343665898615887423610048874121