HHsearch alignment for GI: 254780916 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=94.74 E-value=0.037 Score=34.90 Aligned_cols=78 Identities=17% Similarity=0.134 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC-CCCC-------CCCCC
Q ss_conf 222222223443204887327774367999999842675433210123465542100243311-2555-------53221
Q gi|254780916|r 151 QVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDL-------QTKNS 222 (482)
Q Consensus 151 ~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG-~~~~-------~~~~~ 222 (482)
T Consensus 344 ~~l~gi~F~~~aGe~laIIGPSgSGKStLaR~~vG~W~~~~G-~VRLDGadl~--qWD~e~lG~~iGYLPQdvELF~GTv 420 (556)
T TIGR01842 344 PTLRGISFAIQAGEALAIIGPSGSGKSTLARILVGIWPPASG-SVRLDGADLK--QWDRETLGKHIGYLPQDVELFSGTV 420 (556)
T ss_pred HHHCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCC-CEEEEHHHHH--CCCHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 422786215637745888747865258898788721013565-3364033440--2375365880154798505076767
Q ss_pred CCCCCCCCC
Q ss_conf 110012344
Q gi|254780916|r 223 AQFLGKFIE 231 (482)
Q Consensus 223 ~~~~g~~~~ 231 (482)
T Consensus 421 a~NIARF~e 429 (556)
T TIGR01842 421 AENIARFGE 429 (556)
T ss_pred HHHCCCCCC
T ss_conf 640244688