HHsearch alignment for GI: 254780916 and conserved domain: TIGR01846
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=92.32 E-value=0.13 Score=30.99 Aligned_cols=138 Identities=16% Similarity=0.105 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHH---CCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCC-CCC---CCCCCCCCCCC-C---CCCC
Q ss_conf 8889999999985---7898399992689999999888505743222222222-222---22222222222-2---2222
Q gi|254780916|r 65 DDKENILKNIVDK---IPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRK-QLC---DSIICALREGV-V---PSQE 133 (482)
Q Consensus 65 ~dGlell~~i~~~---~p~ipvIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~-~L~---~~i~~al~~~~-~---~~~~ 133 (482)
T Consensus 372 ~Q~I~LI~K~t~a~~LWfGa-~lVi~G~ls~G~LVA-FNM-lAG~V~~PvlRLAQ~WQDFQq~~Ia~~RlGDiLn~P~E~ 448 (703)
T TIGR01846 372 SQAIELINKLTAALLLWFGA-HLVIKGELSVGQLVA-FNM-LAGRVSQPVLRLAQLWQDFQQVGIAIERLGDILNSPTEP 448 (703)
T ss_pred HHHHHHHHHHHHHHHHHCCC-EEEECCCCCHHHHHH-HHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 88999999999999985051-477626677437998-733-136302358989987666887766653121005868488
Q ss_pred ---CCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCC-C-CCC
Q ss_conf ---21111111122----------22222222222222344320488732777436799999984267543321-0-123
Q gi|254780916|r 134 ---NEHCALDSLIA----------VSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPF-F-IVN 198 (482)
Q Consensus 134 ---~~~~~~~~LiG----------~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~f-i-~v~ 198 (482)
T Consensus 449 ~~d~g~aalP~l~G~i~F~nirFRY~pD~PeVL~nl~L~I~~Ge~IGIvGpSGSGKSTLTKL~QRLYtP~~GqVLVDG~D 528 (703)
T TIGR01846 449 SSDAGLAALPELKGSITFENIRFRYKPDSPEVLSNLSLDIKPGEVIGIVGPSGSGKSTLTKLLQRLYTPEHGQVLVDGVD 528 (703)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 99987303542257267875331468887178732687657865799872789867899999886148888747770300
Q ss_pred CCCCCCC
Q ss_conf 4655421
Q gi|254780916|r 199 CGMIDQD 205 (482)
Q Consensus 199 c~~~~~~ 205 (482)
T Consensus 529 LA~~DP~ 535 (703)
T TIGR01846 529 LAIADPA 535 (703)
T ss_pred CCCCCCC
T ss_conf 0101852