>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.

Probab=98.35 E-value=2.9e-06 Score=63.93 Aligned_cols=215 Identities=17% Similarity=0.215 Sum_probs=133.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC---CCCCCCCCCC-CCCCCCCC--- Q ss_conf 2221111111122222222222222223443204887327774367999999842---6754332101-23465542--- Q gi|254780916|r 132 QENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES---GKRAFFPFFI-VNCGMIDQ--- 204 (482) Q Consensus 132 ~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~---s~r~~~~fi~-v~c~~~~~--- 204 (482) T Consensus 6 RKyRP~~F~d~~GQ~~iv~tL~NAi~~-~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~~i~~g~~ 84 (363) T TIGR02397 6 RKYRPQTFEDVIGQEHIVKTLKNAIKN-GRIAHAYLFSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCKEINSGSS 84 (363) T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCC T ss_conf 223788611023517999999999971-8966234502859976355899999986588787787777502277652898 Q ss_pred -CCCHHHHHCCCCCCC--CCCCCCCCCCCC----CCC---CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf -100243311255553--221110012344----667---1475166420018899988887764200112355321234 Q gi|254780916|r 205 -DKIEKFLFGDVDLQT--KNSAQFLGKFIE----ANG---GTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLD 274 (482) Q Consensus 205 -~~~e~~lFG~~~~~~--~~~~~~~g~~~~----a~~---Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 274 (482) T Consensus 85 ~DviE------iDAASN~gVD~IR-~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEP-----------P~h 146 (363) T TIGR02397 85 LDVIE------IDAASNNGVDDIR-ELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEP-----------PEH 146 (363) T ss_pred CCEEE------ECCCCCCCHHHHH-HHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC-----------CCC T ss_conf 66688------6486568788999-99873036875544335887323028656899987652279-----------876 Q ss_pred CEEEEECCCC----CCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 3156521433----2111111233--379998865433446778774422225566777641011223333211111000 Q gi|254780916|r 275 VRLIFLTEKN----LLPQVKSHVF--RKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSL 348 (482) Q Consensus 275 ~RiIa~t~~~----L~~~~~~g~f--r~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~ 348 (482) T Consensus 147 V~FIlATTE~~KiP~TIlSRCQrF~Fk~----------i~~~~----------i~~~-L~~I~~~E~---I~~e~~AL~~ 202 (363) T TIGR02397 147 VVFILATTEPHKIPATILSRCQRFDFKR----------IPLED----------IVER-LKKILDKEG---IKIEDEALEL 202 (363) T ss_pred EEEEEECCCHHHCCCCCEEECEEECCCC----------CCHHH----------HHHH-HHHHHHHHC---CCCCHHHHHH T ss_conf 2888734871120554021000312678----------99899----------9999-999998708---8317789999 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHCCCC Q ss_conf 12233898689999999999874389--8106889545421244 Q gi|254780916|r 349 LTKYPWIDNVQELKNILLRAVIGLKD--SHLTEDRFVLLLSREG 390 (482) Q Consensus 349 L~~y~WPGNvREL~n~i~r~~i~~~~--~~i~~~~~~~~l~~~~ 390 (482) T Consensus 203 IA~~a-~GS~RDAlsllDQ~~~~~~~~DG~i~~~~v~~~lGl~~ 245 (363) T TIGR02397 203 IARAA-DGSMRDALSLLDQAISFGNGSDGKITYEDVNEMLGLVD 245 (363) T ss_pred HHHHC-CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC T ss_conf 99962-89610688999999982688788657899999835777

HHsearch alignment for GI: 254780916 and conserved domain: TIGR02397