HHsearch alignment for GI: 254780916 and conserved domain: TIGR02902
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.81 E-value=9e-20 Score=159.37 Aligned_cols=242 Identities=22% Similarity=0.285 Sum_probs=177.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH------CCCCCC-CCCC
Q ss_conf 222222222222111111112222222222222222344320488732777436799999984------267543-3210
Q gi|254780916|r 123 ALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHE------SGKRAF-FPFF 195 (482)
Q Consensus 123 al~~~~~~~~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~------~s~r~~-~~fi 195 (482)
T Consensus 48 ~I~Lt~PL~Ek~RP~SF~EIiGQe~GI~ALKAALC--GPNPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FV 125 (532)
T TIGR02902 48 AIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALC--GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFV 125 (532)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 34167887746677763325673556899998606--8689638987886961789999999986508753789886689
Q ss_pred CCCCCCC--CCCCCHHHHHCCC-C-CCCCC--------CCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 1234655--4210024331125-5-55322--------111001234466714751664200188999888877642001
Q gi|254780916|r 196 IVNCGMI--DQDKIEKFLFGDV-D-LQTKN--------SAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIE 263 (482)
Q Consensus 196 ~v~c~~~--~~~~~e~~lFG~~-~-~~~~~--------~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~ 263 (482)
T Consensus 126 EiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~MNKLLKVLEDRKVF 205 (532)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVF 205 (532)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCH
T ss_conf 85051036021466665677615853337654578855758777632025865512124665824353141133022200
Q ss_pred C-----CCCCCC------------CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q ss_conf 1-----235532------------1234315652143321111112333799988654334467787744222--25566
Q gi|254780916|r 264 F-----FDSRGA------------IRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDI--PWLVH 324 (482)
Q Consensus 264 ~-----~g~~~~------------~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI--~~L~~ 324 (482)
T Consensus 206 LdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIp--------------------PAlRSRC~EIFFR~L~~ 265 (532)
T TIGR02902 206 LDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIP--------------------PALRSRCVEIFFRPLLK 265 (532)
T ss_pred HHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCC--------------------HHHHCCCEEEEECCCCH
T ss_conf 0012358777865427899720678734012133369877678--------------------34650522677168887
Q ss_pred HHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---HHCCCCCCCHHHHHHHHCC
Q ss_conf 7776410112233-33211111000122338986899999999998---7438981068895454212
Q gi|254780916|r 325 FFLQSFCTKNAIK-QISISDKALSLLTKYPWIDNVQELKNILLRAV---IGLKDSHLTEDRFVLLLSR 388 (482)
Q Consensus 325 ~fl~~~~~~~~~~-~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~---i~~~~~~i~~~~~~~~l~~ 388 (482)
T Consensus 266 EEi~~iAk~AaeKIg~~l~~~Al~~I~~Ya~--nGREAvN~~QLAaG~a~~E~Rk~I~~~DieWV~~~ 331 (532)
T TIGR02902 266 EEIKEIAKNAAEKIGLNLEKEALDLIAKYAS--NGREAVNLVQLAAGIALGENRKRILAEDIEWVIES 331 (532)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC--CCCHHHHHHHHHHHHEECCCCCEECHHHHHHHHHH
T ss_conf 8999998765653046547547999998740--54067789999731401288761205464455530