HHsearch alignment for GI: 254780916 and conserved domain: TIGR02902

>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.81  E-value=9e-20  Score=159.37  Aligned_cols=242  Identities=22%  Similarity=0.285  Sum_probs=177.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH------CCCCCC-CCCC
Q ss_conf             222222222222111111112222222222222222344320488732777436799999984------267543-3210
Q gi|254780916|r  123 ALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHE------SGKRAF-FPFF  195 (482)
Q Consensus       123 al~~~~~~~~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~------~s~r~~-~~fi  195 (482)
T Consensus        48 ~I~Lt~PL~Ek~RP~SF~EIiGQe~GI~ALKAALC--GPNPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FV  125 (532)
T TIGR02902        48 AIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALC--GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFV  125 (532)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf             34167887746677763325673556899998606--8689638987886961789999999986508753789886689


Q ss_pred             CCCCCCC--CCCCCHHHHHCCC-C-CCCCC--------CCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             1234655--4210024331125-5-55322--------111001234466714751664200188999888877642001
Q gi|254780916|r  196 IVNCGMI--DQDKIEKFLFGDV-D-LQTKN--------SAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIE  263 (482)
Q Consensus       196 ~v~c~~~--~~~~~e~~lFG~~-~-~~~~~--------~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~  263 (482)
T Consensus       126 EiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~MNKLLKVLEDRKVF  205 (532)
T TIGR02902       126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVF  205 (532)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCH
T ss_conf             85051036021466665677615853337654578855758777632025865512124665824353141133022200


Q ss_pred             C-----CCCCCC------------CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q ss_conf             1-----235532------------1234315652143321111112333799988654334467787744222--25566
Q gi|254780916|r  264 F-----FDSRGA------------IRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDI--PWLVH  324 (482)
Q Consensus       264 ~-----~g~~~~------------~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI--~~L~~  324 (482)
T Consensus       206 LdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIp--------------------PAlRSRC~EIFFR~L~~  265 (532)
T TIGR02902       206 LDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIP--------------------PALRSRCVEIFFRPLLK  265 (532)
T ss_pred             HHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCC--------------------HHHHCCCEEEEECCCCH
T ss_conf             0012358777865427899720678734012133369877678--------------------34650522677168887


Q ss_pred             HHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---HHCCCCCCCHHHHHHHHCC
Q ss_conf             7776410112233-33211111000122338986899999999998---7438981068895454212
Q gi|254780916|r  325 FFLQSFCTKNAIK-QISISDKALSLLTKYPWIDNVQELKNILLRAV---IGLKDSHLTEDRFVLLLSR  388 (482)
Q Consensus       325 ~fl~~~~~~~~~~-~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~---i~~~~~~i~~~~~~~~l~~  388 (482)
T Consensus       266 EEi~~iAk~AaeKIg~~l~~~Al~~I~~Ya~--nGREAvN~~QLAaG~a~~E~Rk~I~~~DieWV~~~  331 (532)
T TIGR02902       266 EEIKEIAKNAAEKIGLNLEKEALDLIAKYAS--NGREAVNLVQLAAGIALGENRKRILAEDIEWVIES  331 (532)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC--CCCHHHHHHHHHHHHEECCCCCEECHHHHHHHHHH
T ss_conf             8999998765653046547547999998740--54067789999731401288761205464455530