HHsearch alignment for GI: 254780916 and conserved domain: TIGR02956

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=99.55  E-value=1.6e-14  Score=122.32  Aligned_cols=118  Identities=16%  Similarity=0.227  Sum_probs=106.2

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHCC----
Q ss_conf             352883899869989999999999988988999893--79999860-89989999785469888999999998578----
Q gi|254780916|r    7 LDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTISK-IQVNVIFLSLINCEDDKENILKNIVDKIP----   79 (482)
Q Consensus         7 m~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~~-~~~dlillD~~mP~~dGlell~~i~~~~p----   79 (482)
T Consensus       758 lsqyy~vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~  837 (1052)
T TIGR02956       758 LSQYYRVLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFHQDHRFDLALLDINLPDGDGVTLLQQLRAIYKAKND  837 (1052)
T ss_pred             HHHHCEEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             53000132464474779999999842794472085499999998548876754551578898656789999999973204


Q ss_pred             ----CCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ----983999926899999998885057432222222222222222222
Q gi|254780916|r   80 ----IVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL  124 (482)
Q Consensus        80 ----~ipvIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al  124 (482)
T Consensus       838 ~~~~p~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~l~~~l  886 (1052)
T TIGR02956       838 SQDEPVKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAMLAKIL  886 (1052)
T ss_pred             CCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             4456777222113344776999975302663479987788999999987