HHsearch alignment for GI: 254780916 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.25 E-value=7e-12 Score=103.58 Aligned_cols=221 Identities=15% Similarity=0.212 Sum_probs=154.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCC----CCCEEE---EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 111222222222222222234----432048---8732777436799999984267543321012346554210024331
Q gi|254780916|r 140 DSLIAVSPAMIQVVDLARKAG----DCAIPI---MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 140 ~~LiG~S~~m~~v~~~i~~~a----~~~~~v---li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
T Consensus 566 ~~ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hsvsrLi 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCCHHHHHHHC
T ss_conf 99728499999999999998717999999856899878998778999999999971986114784224321043687863
Q ss_pred CCCCCCCCCCCCCCCCC----CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE---EEEECCCCC
Q ss_conf 12555532211100123----44667147516642001889998888776420011235532123431---565214332
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKF----IEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR---LIFLTEKNL 285 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~----~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R---iIa~t~~~L 285 (482)
T Consensus 646 GaPPGYVGy~e--GG~LTe~Vrr~PysVvLfDEIEKAHpdV~nilLQvlD~G~Lt---D~~Gr~vdF~NtIIImTSN~Gs 720 (852)
T TIGR03345 646 GSPPGYVGYGE--GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVME---DGEGREIDFKNTVILLTSNAGS 720 (852)
T ss_pred CCCCCCCCCCC--CCHHHHHHHHCCCEEEEECHHHHCCHHHHHHHHHHHCCCEEE---CCCCCEEECEEEEEEECCCHHH
T ss_conf 89997667487--772109888099868886113002889999999872467775---7999988452129997572447
Q ss_pred -------------------CCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCC
Q ss_conf -------------------11111---12333799988654334467787744222255667776410112----23333
Q gi|254780916|r 286 -------------------LPQVK---SHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKN----AIKQI 339 (482)
Q Consensus 286 -------------------~~~~~---~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~----~~~~~ 339 (482)
T Consensus 721 ~~i~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRi~ii~F~--~L~--~~~l~~Iv~~~l~~l~~rL~~~~~i-~l 795 (852)
T TIGR03345 721 DLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYL--PLD--DDVLAAIVRLKLDRIARRLKENHGA-EL 795 (852)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCEEEEEEC--CCC--HHHHHHHHHHHHHHHHHHHHHCCCC-EE
T ss_conf 999864037655566899999999999834798886456689736--899--9999999999999999999862896-89
Q ss_pred CCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHH
Q ss_conf 211111000122338--9868999999999987
Q gi|254780916|r 340 SISDKALSLLTKYPW--IDNVQELKNILLRAVI 370 (482)
Q Consensus 340 ~ls~~a~~~L~~y~W--PGNvREL~n~i~r~~i 370 (482)
T Consensus 796 ~~~~~~~~~l~~~g~~~~~GARpl~r~I~~~i~ 828 (852)
T TIGR03345 796 VYSEALVEHIVARCTEVESGARNIDAILNQTLL 828 (852)
T ss_pred EECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 988999999998289977686438999999988