HHsearch alignment for GI: 254780916 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.23 E-value=2.2e-11 Score=100.08 Aligned_cols=223 Identities=19% Similarity=0.240 Sum_probs=154.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCC----CCCEEE---EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 111222222222222222234----432048---8732777436799999984267543321012346554210024331
Q gi|254780916|r 140 DSLIAVSPAMIQVVDLARKAG----DCAIPI---MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 140 ~~LiG~S~~m~~v~~~i~~~a----~~~~~v---li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
T Consensus 565 ~rViGQd~AI~~I~~aI~~sraGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy~E~hsvsrLi 644 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLI 644 (852)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHC
T ss_conf 89717099999999999999718888999745899867887768999999999985585206984304430122477855
Q ss_pred CCCCCCCCCCCCCCCCCC----CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE---EEEECCCCC
Q ss_conf 125555322111001234----4667147516642001889998888776420011235532123431---565214332
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKFI----EANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR---LIFLTEKNL 285 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~~----~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R---iIa~t~~~L 285 (482)
T Consensus 645 GaPPGYVGy~e--gG~Lte~vr~~PysVvL~DEIEKAh~~V~~~lLQilD~G~lt---D~~Gr~vdF~NtiiimTSN~Ga 719 (852)
T TIGR03346 645 GAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLT---DGQGRTVDFRNTVIIMTSNLGS 719 (852)
T ss_pred CCCCCCCCCCC--CCEECHHHHHCCCEEEEECCHHHHCHHHHHHHHHHHCCCEEE---CCCCCEEEEEEEEEEEECCCCH
T ss_conf 89997677687--874239898198879985305430768999999882367430---7999888535568986154065
Q ss_pred CC------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCC
Q ss_conf 11------------------1111233379998865433446778774422225566777641011223--333211111
Q gi|254780916|r 286 LP------------------QVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAI--KQISISDKA 345 (482)
Q Consensus 286 ~~------------------~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~--~~~~ls~~a 345 (482)
T Consensus 720 ~~i~~~~~~~~~~~~~~~~~~~~~~~F~PEflnRid~ii~-F~~L~--~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~ 796 (852)
T TIGR03346 720 QFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVV-FHPLG--REQIARIVEIQLGRLRKRLAERKITLELSDAA 796 (852)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCEEEE-ECCCC--HHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_conf 9997411455579999999999996589989963786898-37899--99999999999999999999779849988899
Q ss_pred CCCCCCCCCC--CCHHHHHHHHHHHHH
Q ss_conf 0001223389--868999999999987
Q gi|254780916|r 346 LSLLTKYPWI--DNVQELKNILLRAVI 370 (482)
Q Consensus 346 ~~~L~~y~WP--GNvREL~n~i~r~~i 370 (482)
T Consensus 797 ~~~l~~~g~~~~~GAR~l~r~i~~~i~ 823 (852)
T TIGR03346 797 LDFLAEAGYDPVYGARPLKRAIQREIE 823 (852)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 999998488977471569999999988