HHsearch alignment for GI: 254780916 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.18 E-value=1.6e-06 Score=65.74 Aligned_cols=200 Identities=15% Similarity=0.188 Sum_probs=106.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCCCCC
Q ss_conf 1111111122222222222222223443204887327774367999999842675-------433210123465542100
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR-------AFFPFFIVNCGMIDQDKI 207 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r-------~~~~fi~v~c~~~~~~~~ 207 (482)
T Consensus 168 ~~gklDpviGRd~Ei~r~i~IL~R--r~KNNpiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LDlg~Lv---- 241 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR--RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI---- 241 (852)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHHHHH----
T ss_conf 828999773836999999999987--32489721279998799999999999866999978851851275288775----
Q ss_pred HHHHHCCCCCCCCCCCCCC-CCCCC---CC-CCEEEECCCCHH--------HHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 2433112555532211100-12344---66-714751664200--------18899988887764200112355321234
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFL-GKFIE---AN-GGTIVLEEPDAL--------PLAVQGRIYNFIETGKIEFFDSRGAIRLD 274 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~-g~~~~---a~-~Gtl~l~ei~~L--------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 274 (482)
T Consensus 242 ----AGtk--yRGeFEeRlk~ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarG-------------e 302 (852)
T TIGR03346 242 ----AGAK--YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-------------E 302 (852)
T ss_pred ----CCCC--CCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCC-------------C
T ss_conf ----2153--00789999999999998589987999612555326887666410677743787479-------------8
Q ss_pred CEEEEECCCCCCCCCCHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHCCC
Q ss_conf 3156521433211111123337------9998865433446778774422225566777---------------641011
Q gi|254780916|r 275 VRLIFLTEKNLLPQVKSHVFRK------DLYYRISVFLINISTLRSRSEDIPWLVHFFL---------------QSFCTK 333 (482)
Q Consensus 275 ~RiIa~t~~~L~~~~~~g~fr~------dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl---------------~~~~~~ 333 (482)
T Consensus 303 lr~IgATT~~--------EYrk~iEkD~AL~RRFq~I~V~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav~LS~R 374 (852)
T TIGR03346 303 LHCIGATTLD--------EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHR 374 (852)
T ss_pred CEEEEECCHH--------HHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCC
T ss_conf 5599827899--------99988322688997377120479986899999997699997627926739999999997134
Q ss_pred CCCCCCCCCCCCCCCC---------CCCCCCCCHHHHHHHHHHH
Q ss_conf 2233332111110001---------2233898689999999999
Q gi|254780916|r 334 NAIKQISISDKALSLL---------TKYPWIDNVQELKNILLRA 368 (482)
Q Consensus 334 ~~~~~~~ls~~a~~~L---------~~y~WPGNvREL~n~i~r~ 368 (482)
T Consensus 375 Yi-~~R~LPDKAIDlLDeA~a~~~~~~~~~p~~l~~~~~~~~~l 417 (852)
T TIGR03346 375 YI-TDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQL 417 (852)
T ss_pred CC-CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 66-77889618999999999988762378946799999999999