HHsearch alignment for GI: 254780916 and conserved domain: cd04153

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=91.91  E-value=1.1  Score=24.59  Aligned_cols=123  Identities=13%  Similarity=0.176  Sum_probs=58.8

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH---CCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             4320488732777436799999984267543321012346554210024331---1255553221110012344667147
Q gi|254780916|r  161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF---GDVDLQTKNSAQFLGKFIEANGGTI  237 (482)
Q Consensus       161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF---G~~~~~~~~~~~~~g~~~~a~~Gtl  237 (482)
T Consensus        13 ~k~~KililG~~~sGKTsil~~l~~~~~~~~~pT~G~~~~~i~~~~~~~~iwD~~G~e~~----~~~~~~y~~~a~~ii~   88 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESL----RSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCC----CCHHHHHHCCCCEEEE
T ss_conf             977999999899998899999997399277167236046999978889999989998656----6226777057753799


Q ss_pred             EECCCCHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf             5166420018-8999888877642001123553212343156521433211111123337
Q gi|254780916|r  238 VLEEPDALPL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK  296 (482)
Q Consensus       238 ~l~ei~~L~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~  296 (482)
T Consensus        89 VvD~sd~~~~~~~~~~l~~~l~~~~~------~~~p---ili~~NK~Dl~~~~~~~ei~~  139 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDL------RKAV---LLVLANKQDLKGAMTPAEISE  139 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHCCCC------CCCC---EEEEEECCCCCCCCCHHHHHH
T ss_conf             99767888999999999999726101------6982---899995555655789999999