HHsearch alignment for GI: 254780916 and conserved domain: cd04153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=91.91 E-value=1.1 Score=24.59 Aligned_cols=123 Identities=13% Similarity=0.176 Sum_probs=58.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH---CCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 4320488732777436799999984267543321012346554210024331---1255553221110012344667147
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF---GDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF---G~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
T Consensus 13 ~k~~KililG~~~sGKTsil~~l~~~~~~~~~pT~G~~~~~i~~~~~~~~iwD~~G~e~~----~~~~~~y~~~a~~ii~ 88 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESL----RSSWNTYYTNTDAVIL 88 (174)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCC----CCHHHHHHCCCCEEEE
T ss_conf 977999999899998899999997399277167236046999978889999989998656----6226777057753799
Q ss_pred EECCCCHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf 5166420018-8999888877642001123553212343156521433211111123337
Q gi|254780916|r 238 VLEEPDALPL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296 (482)
Q Consensus 238 ~l~ei~~L~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~ 296 (482)
T Consensus 89 VvD~sd~~~~~~~~~~l~~~l~~~~~------~~~p---ili~~NK~Dl~~~~~~~ei~~ 139 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDL------RKAV---LLVLANKQDLKGAMTPAEISE 139 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCC------CCCC---EEEEEECCCCCCCCCHHHHHH
T ss_conf 99767888999999999999726101------6982---899995555655789999999