HHsearch alignment for GI: 254780916 and conserved domain: cd04158
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=93.04 E-value=0.61 Score=26.27 Aligned_cols=119 Identities=9% Similarity=0.147 Sum_probs=57.9
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHH
Q ss_conf 88732777436799999984267543321012346554210024331125555322111001234466714751664200
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDAL 245 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L 245 (482)
T Consensus 2 IlilGl~~sGKTtil~~l~~~~~~~~~pT~G~~~~~i~~~~~~l~iwD~-gG~~~~r~~w~~Yy~~~~~iIfVvDssd~~ 80 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDV-GGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEEC-CCCCCCCHHHHHHCCCCCEEEEEEECCHHH
T ss_conf 9999989998899999995799689778688166999989889999989-997244636787555762799999863067
Q ss_pred HH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 18-89998888776420011235532123431565214332111111233
Q gi|254780916|r 246 PL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 246 ~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
T Consensus 81 ~~~ea~~~l~~ll~~~~~------~~~p---iLIlaNK~Dl~~~~~~~ei 121 (169)
T cd04158 81 RVSEAHSELAKLLTEKEL------RDAL---LLIFANKQDVAGALSVEEM 121 (169)
T ss_pred HHHHHHHHHHHHHHHHHH------CCCE---EEEEEECCCCCCCCCHHHH
T ss_conf 799999999999712753------7984---9999735567779899999