HHsearch alignment for GI: 254780916 and conserved domain: cd04158

>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=93.04  E-value=0.61  Score=26.27  Aligned_cols=119  Identities=9%  Similarity=0.147  Sum_probs=57.9

Q ss_pred             EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHH
Q ss_conf             88732777436799999984267543321012346554210024331125555322111001234466714751664200
Q gi|254780916|r  166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDAL  245 (482)
Q Consensus       166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L  245 (482)
T Consensus         2 IlilGl~~sGKTtil~~l~~~~~~~~~pT~G~~~~~i~~~~~~l~iwD~-gG~~~~r~~w~~Yy~~~~~iIfVvDssd~~   80 (169)
T cd04158           2 VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDV-GGKHKLRPLWKHYYLNTQAVVFVVDSSHRD   80 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEEC-CCCCCCCHHHHHHCCCCCEEEEEEECCHHH
T ss_conf             9999989998899999995799689778688166999989889999989-997244636787555762799999863067


Q ss_pred             HH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf             18-89998888776420011235532123431565214332111111233
Q gi|254780916|r  246 PL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF  294 (482)
Q Consensus       246 ~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f  294 (482)
T Consensus        81 ~~~ea~~~l~~ll~~~~~------~~~p---iLIlaNK~Dl~~~~~~~ei  121 (169)
T cd04158          81 RVSEAHSELAKLLTEKEL------RDAL---LLIFANKQDVAGALSVEEM  121 (169)
T ss_pred             HHHHHHHHHHHHHHHHHH------CCCE---EEEEEECCCCCCCCCHHHH
T ss_conf             799999999999712753------7984---9999735567779899999