HHsearch alignment for GI: 254780916 and conserved domain: pfam00072
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=99.88 E-value=4.2e-22 Score=175.87 Aligned_cols=109 Identities=21% Similarity=0.281 Sum_probs=104.0
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 8998699899999999999889889998937--99998608998999978546988899999999857898399992689
Q gi|254780916|r 13 VLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTTQD 90 (482)
Q Consensus 13 ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~~~ 90 (482)
T Consensus 1 ILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~Di~mP~~dG~el~~~ir~~~~~~piI~~T~~~ 80 (111)
T pfam00072 1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLKEKRPDLILLDIRMPGMDGLELLRRIRRRPPTTPVIVLTAHG 80 (111)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 09998989999999999998899999989999999999847998999953689950157999997359998099997508
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999998885057432222222222222222
Q gi|254780916|r 91 NIKILNCFLYNRISKFFLNLVSRKQLCDSII 121 (482)
Q Consensus 91 ~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~ 121 (482)
T Consensus 81 ~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~ir 111 (111)
T pfam00072 81 DEEDAVEALKAGANDFLSKPFDPEELVAALR 111 (111)
T ss_pred CHHHHHHHHHCCCCEEEECCCCHHHHHHHCC
T ss_conf 9999999997798779949999899998529