HHsearch alignment for GI: 254780916 and conserved domain: pfam00158
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=100.00 E-value=0 Score=374.40 Aligned_cols=167 Identities=37% Similarity=0.589 Sum_probs=162.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC-CCC
Q ss_conf 1222222222222222234432048873277743679999998426754332101234655421002433112555-532
Q gi|254780916|r 142 LIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDL-QTK 220 (482)
Q Consensus 142 LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~-~~~ 220 (482)
T Consensus 1 lIG~S~~m~~l~~~i~~~a~~~~pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le~~LFG~~~g~f~g 80 (168)
T pfam00158 1 LIGESPAMQEVLELAKRVAPTDATVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80 (168)
T ss_pred CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 97389999999999999958899889989998888999999998524356883125678998779999875876676689
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 21110012344667147516642001889998888776420011235532123431565214332111111233379998
Q gi|254780916|r 221 NSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY 300 (482)
Q Consensus 221 ~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~ 300 (482)
T Consensus 81 a~~~~~G~le~A~gGTL~LdeI~~L~~~~Q~~Ll~~L~~~~~~~~g~~~~~~~~vRiIast~~~L~~~v~~G~Fr~DLyy 160 (168)
T pfam00158 81 AVSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160 (168)
T ss_pred CCCCCCCCEEECCCCEEECCCHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCCHHHHHH
T ss_conf 87578996422699878802441399999999999985796997799845888549999659889999883996399888
Q ss_pred HHHHHHHH
Q ss_conf 86543344
Q gi|254780916|r 301 RISVFLIN 308 (482)
Q Consensus 301 rL~~~~i~ 308 (482)
T Consensus 161 rLnv~~ie 168 (168)
T pfam00158 161 RLNVVPIE 168 (168)
T ss_pred HHCEEECC
T ss_conf 86523269