HHsearch alignment for GI: 254780916 and conserved domain: pfam05729
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=95.76 E-value=0.029 Score=35.62 Aligned_cols=83 Identities=19% Similarity=0.326 Sum_probs=41.2
Q ss_pred EEEEECCCCCHHHHHHHHHH-HCCCC---CCCCC-CCCCCCCCCCC---CCHHHHHCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 48873277743679999998-42675---43321-01234655421---0024331125555322111-00123446671
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIH-ESGKR---AFFPF-FIVNCGMIDQD---KIEKFLFGDVDLQTKNSAQ-FLGKFIEANGG 235 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH-~~s~r---~~~~f-i~v~c~~~~~~---~~e~~lFG~~~~~~~~~~~-~~g~~~~a~~G 235 (482)
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~~~~sl~~ll~~~~~~~~~~~~~~~~~~~~~~~k~ 81 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADLLFSQWPEPAAPVSEVWAVILELPERV 81 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 89998279898999999999999869843697289999956707776689999999876774576378999998397728
Q ss_pred EEEECCCCHHHH
Q ss_conf 475166420018
Q gi|254780916|r 236 TIVLEEPDALPL 247 (482)
Q Consensus 236 tl~l~ei~~L~~ 247 (482)
T Consensus 82 L~ilDGlDE~~~ 93 (165)
T pfam05729 82 LLILDGLDELAS 93 (165)
T ss_pred EEEECCHHHHCC
T ss_conf 999648455144