HHsearch alignment for GI: 254780916 and conserved domain: pfam06490
>pfam06490 FleQ Flagellar regulatory protein FleQ. This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Probab=98.48 E-value=1.1e-06 Score=66.92 Aligned_cols=106 Identities=18% Similarity=0.183 Sum_probs=81.5
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH-HCC-CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 3899869989999999999988988999893799998-608-99899997854698889999999985789839999268
Q gi|254780916|r 12 RVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTI-SKI-QVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTTQ 89 (482)
Q Consensus 12 rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~al~~l-~~~-~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~~ 89 (482)
T Consensus 1 kILvIddd~~r~~~L~~ILeFlGE~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~--~~~~~l~~l~~~~p~~Pvlllg~~ 78 (109)
T pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAVSSEDLSAALLSSRWEALAVILGSVS--GLADLLKALAKWDPHLPVLLLGEH 78 (109)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCC--CHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 989986888999979999986499649954889889886378852999967852--099999999964889999998788
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998885057432222222222222222222
Q gi|254780916|r 90 DNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124 (482)
Q Consensus 90 ~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al 124 (482)
T Consensus 79 ~~~~~-----~~nvvg~Le~Pl~Y~qL~daLh~cQ 108 (109)
T pfam06490 79 DSAAE-----LANVIGELEEPLNYPQLTDLLHRCQ 108 (109)
T ss_pred CCHHH-----CCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf 75212-----0552587078898799999998752