HHsearch alignment for GI: 254780916 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=91.61 E-value=0.13 Score=30.95 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=23.7
Q ss_pred CCCEEEEEECCCCCHHHHHH-HHHHHCCCCC--CCCCCC
Q ss_conf 43204887327774367999-9998426754--332101
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLS-RFIHESGKRA--FFPFFI 196 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A-~~iH~~s~r~--~~~fi~ 196 (482)
T Consensus 17 ~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis 55 (231)
T pfam06745 17 PEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVT 55 (231)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 299699998589725999999999999986589689998