HHsearch alignment for GI: 254780916 and conserved domain: pfam08298

>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.76  E-value=0.0012  Score=45.33  Aligned_cols=62  Identities=16%  Similarity=0.285  Sum_probs=43.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC----CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             111111112222222222222222344----3204887327774367999999842675433210123
Q gi|254780916|r  135 EHCALDSLIAVSPAMIQVVDLARKAGD----CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN  198 (482)
Q Consensus       135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~  198 (482)
T Consensus        53 rY~~F~dffGme~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~--y~~Y~i~  118 (358)
T pfam08298        53 RYPAFADFFGMEETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLEL--VPIYALK  118 (358)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC--CCEEEEC
T ss_conf             25542320015999999999999997236721058999778987758999999987205--8648844