HHsearch alignment for GI: 254780916 and conserved domain: smart00177
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=92.89 E-value=0.66 Score=26.05 Aligned_cols=120 Identities=12% Similarity=0.192 Sum_probs=58.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC----CCCCCCCCCCCE
Q ss_conf 4320488732777436799999984267543321012346554210024331125555322111----001234466714
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQ----FLGKFIEANGGT 236 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~----~~g~~~~a~~Gt 236 (482)
T Consensus 11 kk~~kililG~~~~GKTsil~~l~~~~~~~~~pTvg~~~~~~~~~~~~l~iwD-----~~Gqe~~r~l~~~Yy~~a~~iI 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWD-----VGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEE-----CCCCCCCCHHHHHHCCCCCEEE
T ss_conf 88899999988999989999999659977757978810799998989999998-----9998545536777557761899
Q ss_pred EEECCCCHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 75166420018-89998888776420011235532123431565214332111111233
Q gi|254780916|r 237 IVLEEPDALPL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 237 l~l~ei~~L~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
T Consensus 86 fVvD~sd~~~~~~~~~~l~~~l~~~~~------~~~p---iLil~NK~Dl~~~~~~~ei 135 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDEL------RDAV---ILVFANKQDLPDAMKAAEI 135 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHHCCHHH------CCCE---EEEEEECCCCCCCCCHHHH
T ss_conf 998668778999999999999631531------6986---9999845667678899999