BLAST/PSIBLAST alignment of GI: 254780916 and GI: 190893375 at iteration 1

>gi|190893375|ref|YP_001979917.1| sigma-54-dependent transcriptional regulator (activator) protein [Rhizobium etli CIAT 652] Length = 513
>gi|190698654|gb|ACE92739.1| sigma-54-dependent transcriptional regulator (activator) protein [Rhizobium etli CIAT 652] Length = 513
>gi|327188781|gb|EGE55975.1| sigma-54-dependent transcriptional regulator (activator) protein [Rhizobium etli CNPAF512] Length = 513

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 175/502 (34%), Positives = 286/502 (56%), Gaps = 38/502 (7%)

Query: 12  RVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQV-------NVIFLSLINCE 64
           ++L+++ D  Q +++K+ +E +G+   +V+ ++   I    V       NVI L L+  E
Sbjct: 12  QILVVEDDPVQRRLLKNAIERHGH---VVHQAENGRIGLEMVKRDSGLFNVIVLDLMMPE 68

Query: 65  DDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124
                 L  + +    +P+IVQT Q  I+ +   +      F +  VS +++  SI  A+
Sbjct: 69  MTGLEFLDALHEFGTQIPVIVQTGQGGIETVVQAMRAGAFDFVVKPVSPERIATSISNAM 128

Query: 125 R--EGVVPSQENEHC-----ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKK 177
           +  +  V ++            D +++ SPAM++V+DLA++A    IP++++GE GVGK+
Sbjct: 129 KLDQREVKARAGRRSRSGSVGFDDIVSASPAMLRVIDLAQRAAQSNIPVVLEGESGVGKE 188

Query: 178 RLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGT 236
            ++R I   G+R+  PF  VNCG I  + +E  LFG +    T  + + +GKF+EA+GGT
Sbjct: 189 LVARAIQSGGERSNKPFVTVNCGAIPHNLVESILFGHEKGAFTGATERHIGKFMEADGGT 248

Query: 237 IVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296
           I L+E   LPL VQ ++   ++ G+IE   +R A +++VRLI  T K+L+ +VK+  FR+
Sbjct: 249 IFLDEIGDLPLEVQVKLLRAVQQGEIETVGARTAHKVNVRLISATNKDLIEEVKNGHFRE 308

Query: 297 DLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCT--KNAIKQISISDKALSLLTKYPW 354
           DLYYR++VF I I  LR R EDIP LV  F   F +  KN  ++++++  AL+LLT Y W
Sbjct: 309 DLYYRLNVFPITIPALRKRKEDIPHLVRVFADRFSSEQKNG-RRMTVNSGALALLTAYDW 367

Query: 355 IDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTI 414
             N+++L+N + RAV+  +   LTE  F  + ++    E E     A      G  +D  
Sbjct: 368 PGNIRQLENAIFRAVVLAEGPELTEADFPQIAAQ--LPEYEVVDHLALVADNTGLDADEA 425

Query: 415 ---------------LDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVAR 459
                          L   S  +I ++   G+VR+L+D+E+E+I  A+K YR QMS+VAR
Sbjct: 426 YSEEYRAPPEVHHHRLSEASDNAIASVNPSGDVRKLADVEEELIRFALKFYRGQMSQVAR 485

Query: 460 RLGIGRSTLYRKIREYNIEVDS 481
           +LGIGRSTLYRK+++Y I+ D+
Sbjct: 486 KLGIGRSTLYRKLKDYGIDPDN 507