BLAST/PSIBLAST alignment of GI: 254780916 and GI: 209550871 at iteration 1
>gi|209550871|ref|YP_002282788.1| Fis family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 514
>gi|209536627|gb|ACI56562.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 514
 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 176/503 (34%), Positives = 287/503 (57%), Gaps = 39/503 (7%)

Query: 12  RVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQV-------NVIFLSLINCE 64
           ++L+++ D  Q +++K+ +E +G+   +V+ ++   I    V       NVI L L+  E
Sbjct: 12  QILVVEDDPVQRRLLKNAIERHGH---VVHQAENGRIGLEMVKRDSGLFNVIVLDLMMPE 68

Query: 65  DDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124
                 L  + +    +P+IVQT Q  I+ +   +      F +  VS +++  SI  A+
Sbjct: 69  MTGLEFLDALHEFGTQIPVIVQTGQGGIETVVQAMRAGAFDFVVKPVSPERIATSISNAM 128

Query: 125 R--EGVVPSQENEHC-----ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKK 177
           +  +  V ++            D +++ SPAM++V+DLA++A    IP++++GE GVGK+
Sbjct: 129 KLDQREVKARAGRRSRSGSVGFDDIVSASPAMLRVIDLAQRAAQSNIPVVLEGESGVGKE 188

Query: 178 RLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGT 236
            ++R I   G R+  PF  VNCG I  + +E  LFG +    T  + + +GKF+EA+GGT
Sbjct: 189 LVARAIQSGGDRSNKPFVTVNCGAIPHNLVESILFGHEKGAFTGATERHIGKFMEADGGT 248

Query: 237 IVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296
           I L+E   LPL VQ ++   ++ G+IE   +R A +++VRLI  T K+L+ +VK+  FR+
Sbjct: 249 IFLDEIGDLPLEVQVKLLRAVQQGEIETVGARTAHKVNVRLISATNKDLIEEVKNGHFRE 308

Query: 297 DLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCT--KNAIKQISISDKALSLLTKYPW 354
           DLYYR++VF I I  LR R EDIP LV  F + F +  KN  ++++++  AL+LLT Y W
Sbjct: 309 DLYYRLNVFPITIPALRKRKEDIPHLVRVFAERFSSEQKNG-RRMTVNAGALALLTAYDW 367

Query: 355 IDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTI 414
             N+++L+N + RAV+  +   LTE  F  + ++    E E     A      G   D  
Sbjct: 368 PGNIRQLENAIFRAVVLAEGPELTEGDFPQIAAQ--LPEYEVVDHLALVADNTGLDPDDS 425

Query: 415 ----------------LDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVA 458
                           L  +S+ +I ++   G+VRRL+D+E+E+I  A+K YR QMS+VA
Sbjct: 426 YGEEFRASISGEVHHRLSEVSENAIASVNPAGDVRRLADVEEELIRFALKFYRGQMSQVA 485

Query: 459 RRLGIGRSTLYRKIREYNIEVDS 481
           R+LGIGRSTLYRK+++Y I+ D+
Sbjct: 486 RKLGIGRSTLYRKLKDYGIDPDN 508