BLAST/PSIBLAST alignment of GI: 254780916 and GI: 241206285 at iteration 1

>gi|241206285|ref|YP_002977381.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 515
>gi|240860175|gb|ACS57842.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 515

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 173/503 (34%), Positives = 284/503 (56%), Gaps = 38/503 (7%)

Query: 12  RVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQV-------NVIFLSLINCE 64
           ++L+++ D  Q +++K+ +E +G+   +V+ ++   I    V       NVI L L+  E
Sbjct: 12  QILVVEDDPVQRRLLKNAIERHGH---VVHQAENGRIGLEMVKRDSGLFNVIVLDLMMPE 68

Query: 65  DDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124
                 L  + +    +P+IVQT Q  I+ +   +      F +  VS +++  SI  A+
Sbjct: 69  MTGLEFLDALHEFGTQIPVIVQTGQGGIETVVQAMRAGAFDFVVKPVSPERIATSISNAM 128

Query: 125 R--EGVVPSQENEHC-----ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKK 177
           +  +  V ++            D +++ SPAM++V+DLA++A    IP++++GE GVGK+
Sbjct: 129 KLDQREVKARAGRRSRSGSVGFDDIVSASPAMLRVIDLAQRAAQSNIPVVLEGESGVGKE 188

Query: 178 RLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGT 236
            ++R I   G R+  PF  VNCG I  + +E  LFG +    T  + + +GKF+EA+GGT
Sbjct: 189 LVARAIQSGGDRSNKPFVTVNCGAIPHNLVESILFGHEKGAFTGATERHIGKFMEADGGT 248

Query: 237 IVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296
           I L+E   LPL VQ ++   ++ G+IE   +R A +++VRLI  T K+L+ +VK+  FR+
Sbjct: 249 IFLDEIGDLPLEVQVKLLRAVQQGEIETVGARTAHKVNVRLISATNKDLIEEVKNGHFRE 308

Query: 297 DLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCT--KNAIKQISISDKALSLLTKYPW 354
           DLYYR++VF I I  LR R EDIP LV  F   F +  KN  ++++++   L+LLT Y W
Sbjct: 309 DLYYRLNVFPITIPALRKRKEDIPHLVRVFADRFSSEQKNG-RRMTVNAGTLALLTAYDW 367

Query: 355 IDNVQELKNILLRAVIGLKDSHLTE----------------DRFVLLLSREGKKEREFHT 398
             N+++L+N + RAV+  +   LTE                D   L+    G      + 
Sbjct: 368 PGNIRQLENAIFRAVVLAEGPELTEADFPQIAAQLPEYDVVDHLALVADNTGLDPDNGYG 427

Query: 399 ETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVA 458
           E      + G+     L   S+ +I ++   G+VR+L+D+E+E+I  A+K YR QMS+VA
Sbjct: 428 EDFRASMS-GEVHHHRLSEASENAIASVNPAGDVRKLADVEEELIRFALKFYRGQMSQVA 486

Query: 459 RRLGIGRSTLYRKIREYNIEVDS 481
           R+LGIGRSTLYRK+++Y I+ D+
Sbjct: 487 RKLGIGRSTLYRKLKDYGIDPDN 509