BLAST/PSIBLAST alignment of GI: 254780916 and GI: 315122736 at iteration 1

>gi|315122736|ref|YP_004063225.1| putative sigma-54-dependent transcription regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 494
>gi|313496138|gb|ADR52737.1| putative sigma-54-dependent transcription regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 494

 Score =  558 bits (1438), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 295/496 (59%), Positives = 376/496 (75%), Gaps = 16/496 (3%)

Query: 1   MPRKKSLDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNV----SDLSTISKIQVNVI 56
           M  K+SLD  + +LIID+DDEQ  +IK+++ESYGYDVFI++V     DL  + KI+V+VI
Sbjct: 1   MHIKRSLDDRQGLLIIDQDDEQSNLIKEYMESYGYDVFIIDVLSQCPDLLVLDKIKVDVI 60

Query: 57  FLSLINCEDDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQL 116
           FLSLIN  DDK  +L+ IV+K+P +PIIVQT  D +KIL   L +RI K F N VS++ L
Sbjct: 61  FLSLINFGDDKGKVLQTIVEKMPNIPIIVQTKHDELKILISSLQDRIPKCFFNPVSQEHL 120

Query: 117 CDSIICAL-REGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVG 175
             SI   L R+    ++E ++  LDSLIAVS  MIQV++LARKA  C IP+MI+GEFGVG
Sbjct: 121 FYSIRSILERKKNSSAEEQKYFTLDSLIAVSSEMIQVINLARKAVYCTIPVMIEGEFGVG 180

Query: 176 KKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGG 235
           KK L+  IH SG RA FPF +VNCG+ DQDK+EK LFG VDLQ +NS  FLGKF+EANGG
Sbjct: 181 KKTLAHSIHASGSRASFPFVVVNCGISDQDKVEKDLFGKVDLQGENSTYFLGKFVEANGG 240

Query: 236 TIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFR 295
           TI+LEEP AL L VQ +I +FIETGKIEF DSR A++LDVRLIF TEKNL  +VK+ VF 
Sbjct: 241 TILLEEPSALSLKVQRKILHFIETGKIEFDDSRNALKLDVRLIFATEKNLFQEVKNQVFS 300

Query: 296 KDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWI 355
           KDLYY+IS+F   I TLRSR +DIPWL  FFL+ FC +N ++QI++S+KALS+LT Y W 
Sbjct: 301 KDLYYKISIFSCKIPTLRSRQDDIPWLARFFLKRFCLENNVQQINLSEKALSMLTHYKWT 360

Query: 356 DNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACT----CYTE---- 407
           DNVQEL+NI+LR+V+G+KDS++TED F  LL   G +E+E ++ T+ T    C  +    
Sbjct: 361 DNVQELENIILRSVVGIKDSYITEDCFTSLLFEAGNQEKEINSNTSETFDIYCMQDENNN 420

Query: 408 -GKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRS 466
             +SS+ +  ++S+ +I +I + GE+RRLSDIEKE+I LAMKLYR QMSEVARRLGIGRS
Sbjct: 421 IPQSSNYL--SISKGTIFSIDKYGEIRRLSDIEKEMIRLAMKLYREQMSEVARRLGIGRS 478

Query: 467 TLYRKIREYNIEVDSL 482
           TLYRKI+EYNIEVD+L
Sbjct: 479 TLYRKIKEYNIEVDTL 494